Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01333 ATGGCAATGGGTGGTAGTGATCTCAAGATGGCATGCGTGGTTGTGATGTGCATGGCCGTGGTGGGTGCACCAATAATGGCAGAAGCTGCCATGACATGTGGTAGTGTAACACAGAGCCTAGCACCATGTATATCATACTTGATGAATGGTGGAAGTGCTTCACAAGGTTGCTGTACAGGAGTGAGGAACATCCTTGGTGCTGCCACCACAACCGCTGACCGCCAGGCTGTGTGTAACTGCCTTAAGTCCGCTGCTGGTGCCGTTTCTGGTATCAACGACAAGTACGTTCAAGCACTGCCTGCTCAATGCAATGTCAACATCCCTTTCAAGATCAGCACCTCCACCAACTGCGCAAAGTATCAAGTTCTGAAGGAGCGGGTGCATGGGATGGCTGCTGCAGGATACTAA 408 0.5123 MAMGGSDLKMACVVVMCMAVVGAPIMAEAAMTCGSVTQSLAPCISYLMNGGSASQGCCTGVRNILGAATTTADRQAVCNCLKSAAGAVSGINDKYVQALPAQCNVNIPFKISTSTNCAKYQVLKERVHGMAAAGY. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01333 135 SMART aai_6 33 117 IPR016140 -
Seca2g01333 135 PRINTS Plant phospholipid transfer protein signature 32 48 IPR000528 GO:0006869|GO:0008289
Seca2g01333 135 PRINTS Plant phospholipid transfer protein signature 90 107 IPR000528 GO:0006869|GO:0008289
Seca2g01333 135 PRINTS Plant phospholipid transfer protein signature 108 119 IPR000528 GO:0006869|GO:0008289
Seca2g01333 135 PRINTS Plant phospholipid transfer protein signature 52 66 IPR000528 GO:0006869|GO:0008289
Seca2g01333 135 PRINTS Plant phospholipid transfer protein signature 73 88 IPR000528 GO:0006869|GO:0008289
Seca2g01333 135 Pfam Protease inhibitor/seed storage/LTP family 33 117 IPR016140 -
Seca2g01333 135 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 32 119 IPR036312 -
Seca2g01333 135 CDD nsLTP1 32 117 - -
Seca2g01333 135 Gene3D - 30 120 IPR036312 -
Seca2g01333 135 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 10 118 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01333 Seca-Chr2 22264521 22266304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01333 8 117 Acyl Lipid Metabolism Gene Families AT2G38530 54.054 1.74e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01333 - - pvu:PHAVU_008G087100g 148.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10913 4 246767501 246767944 Seca2g01333 2 22264521 22266304 PCT