Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05009 ATGGGTAACTTCAAGTTAGCATTGGTTGTTATGATGTTCATCACTTTGCTGTATGCACAAAATGGTGGTGCAATTTCATGTGGACAAGTCACTCGTAGCCTAGTGCCATGCATGGGTTATGTTCAGAATGGCGGTGCTGTGTCACCAGGTTGTTGTTATGGCATTAGAGGGCTAATTAACGGGGCTAGGACCACGGCTGACCGTCGGGCAACTTGTGCTTGCTTGAAGTCAGCTGCTGCTTCTTTCAAAAGAATCAATGTAGGCTATGCTGCTGCACTCCCCGGCAAATGTGGGGTTAATATTCCTTACAAGATCAGTGCTTCCACCAATTGTGCTAGAATTAGGTAA 348 0.4598 MGNFKLALVVMMFITLLYAQNGGAISCGQVTRSLVPCMGYVQNGGAVSPGCCYGIRGLINGARTTADRRATCACLKSAAASFKRINVGYAAALPGKCGVNIPYKISASTNCARIR 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05009 115 Gene3D - 24 115 IPR036312 -
Vifa2g05009 115 PRINTS Plant phospholipid transfer protein signature 26 42 IPR000528 GO:0006869|GO:0008289
Vifa2g05009 115 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Vifa2g05009 115 PRINTS Plant phospholipid transfer protein signature 67 82 IPR000528 GO:0006869|GO:0008289
Vifa2g05009 115 PRINTS Plant phospholipid transfer protein signature 46 60 IPR000528 GO:0006869|GO:0008289
Vifa2g05009 115 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Vifa2g05009 115 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 6 112 IPR000528 GO:0006869|GO:0008289
Vifa2g05009 115 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Vifa2g05009 115 FunFam Non-specific lipid-transfer protein 24 115 - -
Vifa2g05009 115 CDD nsLTP1 25 111 - -
Vifa2g05009 115 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vifa2g05009 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 24 114 IPR036312 -
Vifa2g05009 115 Pfam Protease inhibitor/seed storage/LTP family 27 111 IPR016140 -
Vifa2g05009 115 SMART aai_6 27 111 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05009 Vifa-Chr2 1486896185 1486896692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05009 4 115 Acyl Lipid Metabolism Gene Families AT5G59310 50.000 1.55e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05009 - - psat:127107290 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05001 2 1484964094 1484964561 Vifa2g05009 2 1486896185 1486896692 PCT