Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05008 ATGGCAAGCTTGAAACTTACATGTGTGGTTGCACTCGCACTGCTGTGCATGGTGGTTATTACTGCACCAATGGCAGTAACTTCAACCTCATGCATTAAGGTAAGTGCTTACCTTACTCCATGCCTTTCTTATCTTAAGGGAGGTAGTGGTCCCTCGAAACTATGCTGTTATGGAGCAAAAAAGCTTAACGGGACGGCCGGCACTACCGCCGACCGTCAGGCTACTTGCAAATGCTTGAAAAGTGCAGCTGGTTTCGTTTCCGGTTTGAATGACACCAACGCTGGTACTCTCTCTGCTAAATGTGGTCTTAACCTTCCCTACAAATTTGGCCCTGATACCGATTGTTCTGGGTACGTTTTATAA 363 0.4656 MASLKLTCVVALALLCMVVITAPMAVTSTSCIKVSAYLTPCLSYLKGGSGPSKLCCYGAKKLNGTAGTTADRQATCKCLKSAAGFVSGLNDTNAGTLSAKCGLNLPYKFGPDTDCSGYVL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05008 120 CDD nsLTP1 30 116 - -
Vifa2g05008 120 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vifa2g05008 120 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 7 116 IPR000528 GO:0006869|GO:0008289
Vifa2g05008 120 Pfam Probable lipid transfer 17 107 IPR016140 -
Vifa2g05008 120 Gene3D - 29 117 IPR036312 -
Vifa2g05008 120 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 117 IPR036312 -
Vifa2g05008 120 SMART aai_6 31 115 IPR016140 -
Vifa2g05008 120 PRINTS Plant phospholipid transfer protein signature 71 86 IPR000528 GO:0006869|GO:0008289
Vifa2g05008 120 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Vifa2g05008 120 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Vifa2g05008 120 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
Vifa2g05008 120 PRINTS Plant phospholipid transfer protein signature 106 117 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05008 Vifa-Chr2 1486155953 1486156315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05008 1 116 Acyl Lipid Metabolism Gene Families AT4G33355 37.931 1.97e-22 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05008 - - psat:127104602 219.164