LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu10g01364	ATGGCTGCTCTCAAGTTTGCATGCGTGGTTGCGGTGATGTCCATGGTGCTAGTCACTGCACCCTTGGTACATGCGATCACGTGCGGGCAAGTCGCCAGTATCCTATCTCCGTGCATCAATTACCTTCGGAATAATCCTGGCGGAGGGCCGCCGACGCAGTGCTGCAGAGGAGTGAGGACCCTGAACAGCGCCGCGAGGACCACCGGTGACCGCCGGATCACGTGTAATTGCCTGAGATCCTTTGTTGCTTCCTCTTCAGGGGTTAATTTCAATAACGCAGCTTCACTAGCAGGAAGATGTGGAGTGAGGATCCCCTACAGGATTAGCCCTTCCATCAACTGCAACAGGATCAGGTGA	357	0.549	MAALKFACVVAVMSMVLVTAPLVHAITCGQVASILSPCINYLRNNPGGGPPTQCCRGVRTLNSAARTTGDRRITCNCLRSFVASSSGVNFNNAASLAGRCGVRIPYRISPSINCNRIR*	119

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu10g01364	118	PANTHER	NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED	6	115	IPR000528	GO:0006869\|GO:0008289
	Lapu10g01364	118	CDD	nsLTP1	26	115	-	-
	Lapu10g01364	118	PRINTS	Plant phospholipid transfer protein signature	70	85	IPR000528	GO:0006869\|GO:0008289
	Lapu10g01364	118	PRINTS	Plant phospholipid transfer protein signature	27	43	IPR000528	GO:0006869\|GO:0008289
	Lapu10g01364	118	PRINTS	Plant phospholipid transfer protein signature	105	116	IPR000528	GO:0006869\|GO:0008289
	Lapu10g01364	118	PRINTS	Plant phospholipid transfer protein signature	49	63	IPR000528	GO:0006869\|GO:0008289
	Lapu10g01364	118	PRINTS	Plant phospholipid transfer protein signature	87	104	IPR000528	GO:0006869\|GO:0008289
	Lapu10g01364	118	ProSitePatterns	Plant lipid transfer proteins signature.	96	117	IPR000528	GO:0006869\|GO:0008289
	Lapu10g01364	118	SMART	aai_6	28	114	IPR016140	-
	Lapu10g01364	118	Gene3D	-	25	118	IPR036312	-
	Lapu10g01364	118	Pfam	Probable lipid transfer	9	106	IPR016140	-
	Lapu10g01364	118	SUPERFAMILY	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	25	117	IPR036312	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu10g01364	Lapu-Chr10	20279450	20283219	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu10g01364	6	118	Acyl Lipid Metabolism Gene Families	AT5G59320	48.673	3.17e-27	95.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu10g01364	-		-	pvu:PHAVU_010G079000g	181.03