Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00922 ATGGCTAGCCTGAAGGTTGCATGCATGGTTGCGGTGGTGTTCATGGTCGTGGTGAGTGCACATATGGCACATGCGATCACGTGCGGGCAAGTGGGCTCTTATGTGGCTCCATGCATTGGCTACCTCCAAAAGGGCGGAAATCCGTCGGGGCCGTGTTGCAACGGAGTGAAGAACCTGAACAACGCCGCAAAGACCACCGCTGACCGCCAGGCCACGTGCAAATGTCTGAAAGTGCTTGCCAGTTCAGCGTCCGGTGTCAACGCGGGCAACGCCGCTTCACTCCCAAAAAAATGTCAAGTCAATGTCCCCTACACGATCAGCACCTCCACCAACTGCAATACGTATGTTCAACTTTCCTCACACATTTCTTTCACTAACAGCCTCATTACGCTAATTACTCTAATTAATTCACATACTCACATACCCTTATTAAATATAGTAACTTTAGATCACAATTACACTCTCTCTAACATATCTCCACACATTTCAAGAAAAAAGAAAACATTTTTGCAGTTAGATGTAGGAGAAGAGATCAATGGTTAA 543 0.4678 MASLKVACMVAVVFMVVVSAHMAHAITCGQVGSYVAPCIGYLQKGGNPSGPCCNGVKNLNNAAKTTADRQATCKCLKVLASSASGVNAGNAASLPKKCQVNVPYTISTSTNCNTYVQLSSHISFTNSLITLITLINSHTHIPLLNIVTLDHNYTLSNISPHISRKKKTFLQLDVGEEING 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00922 180 CDD nsLTP1 26 113 - -
Vimu9g00922 180 Gene3D - 25 115 IPR036312 -
Vimu9g00922 180 Pfam Protease inhibitor/seed storage/LTP family 28 112 IPR016140 -
Vimu9g00922 180 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 115 IPR036312 -
Vimu9g00922 180 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 113 IPR000528 GO:0006869|GO:0008289
Vimu9g00922 180 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Vimu9g00922 180 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Vimu9g00922 180 PRINTS Plant phospholipid transfer protein signature 103 114 IPR000528 GO:0006869|GO:0008289
Vimu9g00922 180 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Vimu9g00922 180 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Vimu9g00922 180 SMART aai_6 28 112 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00922 Vimu-Chr9 15181628 15182170 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00922 8 114 Acyl Lipid Metabolism Gene Families AT5G59310 55.140 3.18e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00922 - - gmx:100818917 139.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00140 6 1823394 1823741 Vimu9g00922 9 15181628 15182170 PCT