Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00920 ATGGCTAGCCTGAAGGTTGCATGCATGGTTGCGGTGGTGTTCATGGTCGTGGTGAGTGCACATATGGCACATGCTATCACGTGTGGTCAAGTGACCACTGCTGTGGCTCCCTGCCTCGCCTACCTCAGAAGTGGCGGAAATCCGTCGGGGGCGTGTTGCAACGGAGTGAGCAACCTGAACTCCCAGGCGAAGACCACCGCTGACCGCAGGGCCGCGTGCAACTGTCTGAAAAACCTTTCCGGTAGAGTGCCGGGTCTCAACCCGGGCAACGCCGCTTCACTCCCAGGCAAATGTAGAGTCGATGTCCCCTACAAGATCAGCACCTCCACCAACTGCAATACGTCTTAG 348 0.5776 MASLKVACMVAVVFMVVVSAHMAHAITCGQVTTAVAPCLAYLRSGGNPSGACCNGVSNLNSQAKTTADRRAACNCLKNLSGRVPGLNPGNAASLPGKCRVDVPYKISTSTNCNTS 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00920 115 Pfam Protease inhibitor/seed storage/LTP family 28 112 IPR016140 -
Vian9g00920 115 FunFam Non-specific lipid-transfer protein 25 115 - -
Vian9g00920 115 CDD nsLTP1 26 113 - -
Vian9g00920 115 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Vian9g00920 115 PRINTS Plant phospholipid transfer protein signature 103 114 IPR000528 GO:0006869|GO:0008289
Vian9g00920 115 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Vian9g00920 115 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Vian9g00920 115 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Vian9g00920 115 Gene3D - 25 115 IPR036312 -
Vian9g00920 115 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 113 IPR000528 GO:0006869|GO:0008289
Vian9g00920 115 SMART aai_6 28 112 IPR016140 -
Vian9g00920 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 114 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00920 Vian-Chr9 17065326 17065764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00920 12 113 Acyl Lipid Metabolism Gene Families AT5G59320 50.000 9.15e-30 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00920 - - gmx:100818917 144.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00844 2 12790767 12792397 Vian9g00920 9 17065326 17065764 PCT