Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01330 ATGGCTAGCCTCAAGTTTGCATGCGTAGTTGCGGTGATATGCATGGTTGTGGTGATCACTGCACCCATGACAAATGCCATCACGTGCGGGGAAGTAGCCAGATCCCTATCTCCATGCATCAATTACCTTCGGAGCCGCCGCGGCGGATCACCGGAGGCGGAATGCTGCAGAGGAGTCACGAGCCTCAACCGCGCCGCCAGTAACACCGCCGACCGACGCACCGCGTGCAATTGCCTGAAATCCGTTGCCGCTTCTATTTCTGGTTTAAATGCCAACAACGCAGCTTCACTCCCCGGGAGATGTAGAGTCAGGGTGCCCTACAGGATCAGCACCTCCACCAACTGCAACAGGATCAGCTTTGAGATTGAAAAAGGTTCTTGGCTCAGTTATTTTGAGCTGCCAAACTACGTGGCTGGTAGAAGTATTTTGGATGGGGTTGTGGCGGAAAACGAGTTGGTAGATCTTGTTAAAAGGGGTAAAAGGAGTTGCTTTATTTTTAACATTGATTTTGTGAAAGCTTACAACTCAGTCAATTGGGAGTTCCTTGATTATATGATGACACATCTTAGTTGTTTTGAGGAGCTGCAGAGGAAGTGGGTAAAGGTTGTTGTGTGCTCTAGTAGGATGTTGGTCTTAGTTAATGAGAGTCCGATGAAGGAATTTGTGGCAGAAAAGGGATTGAAACAAGGTGATCCTTTAGTTCCTTTTCTCTTTTTTATTGTGGCTGAAGGTGTCCATGGTTTGGTGAGTAGGTCAGTGAAGTTAGGGACCTTTAGGTTACTTAAAGTTGATGATGAGGTGTCTTTCTCTATCTTGCAATATGTCGATGATTCGATTTTGTTTGGGGAGACTAGTTGGGACAACTTATAG 870 0.4667 MASLKFACVVAVICMVVVITAPMTNAITCGEVARSLSPCINYLRSRRGGSPEAECCRGVTSLNRAASNTADRRTACNCLKSVAASISGLNANNAASLPGRCRVRVPYRISTSTNCNRISFEIEKGSWLSYFELPNYVAGRSILDGVVAENELVDLVKRGKRSCFIFNIDFVKAYNSVNWEFLDYMMTHLSCFEELQRKWVKVVVCSSRMLVLVNESPMKEFVAEKGLKQGDPLVPFLFFIVAEGVHGLVSRSVKLGTFRLLKVDDEVSFSILQYVDDSILFGETSWDNL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01330 289 Pfam Protease inhibitor/seed storage/LTP family 29 115 IPR016140 -
Gma01g01330 289 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 118 IPR036312 -
Gma01g01330 289 ProSitePatterns Plant lipid transfer proteins signature. 97 118 IPR000528 GO:0006869|GO:0008289
Gma01g01330 289 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 131 283 IPR000477 -
Gma01g01330 289 Gene3D - 26 120 IPR036312 -
Gma01g01330 289 PANTHER - 1 117 IPR000528 GO:0006869|GO:0008289
Gma01g01330 289 SMART aai_6 29 115 IPR016140 -
Gma01g01330 289 CDD nsLTP1 27 116 - -
Gma01g01330 289 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 117 - -
Gma01g01330 289 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Gma01g01330 289 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Gma01g01330 289 PRINTS Plant phospholipid transfer protein signature 71 86 IPR000528 GO:0006869|GO:0008289
Gma01g01330 289 PRINTS Plant phospholipid transfer protein signature 106 117 IPR000528 GO:0006869|GO:0008289
Gma01g01330 289 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01330 Gma-Chr1 46592721 46603108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g01330 6 118 Acyl Lipid Metabolism Gene Families AT5G59320 50.442 3.13e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01330 - - gmx:100775184 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02538 09 50674443 50675646 Gma01g01330 01 46592721 46603108 PCT
Gma01g01330 01 46592721 46603108 Gma09g02538 09 50674443 50675646 PCT