Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0827 ATGGGTACCTTTAAGTTGGCAGTGGTTGTCGTGTTGTGCATGGCCATCGTGGGTTCCTACACTGCTAATGCCATAGATTGCGGTCAAGTTGGGGGAAGGCTCATACCATGCATAGGGTATCTTCGAGGAGGTGGTCCCGTGCCTGGCGCATGCTGTGGCGGAGTGAAGGGACTACTGGCCATGGCTAGAACCACTGCTGATCGCCGTAGCATTTGCAACTGTTTGAAGATGGCTGCTTCTGGGTTTAGAGGGCTCGTTCCTGCAAACGCTGAGTCTCTCCCCGGCAAGTGTGGGATTCGAATTCCCTACAAGATCAGCACCTCCATCAACTGTAATAGCATCAATTAA 348 0.523 MGTFKLAVVVVLCMAIVGSYTANAIDCGQVGGRLIPCIGYLRGGGPVPGACCGGVKGLLAMARTTADRRSICNCLKMAASGFRGLVPANAESLPGKCGIRIPYKISTSINCNSIN* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0827 115 Pfam Protease inhibitor/seed storage/LTP family 27 109 IPR016140 -
Apr10g0827 115 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 113 - -
Apr10g0827 115 CDD nsLTP1 25 112 - -
Apr10g0827 115 SMART aai_6 27 111 IPR016140 -
Apr10g0827 115 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Apr10g0827 115 Gene3D - 24 115 IPR036312 -
Apr10g0827 115 PANTHER - 1 113 IPR000528 GO:0006869|GO:0008289
Apr10g0827 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 25 114 IPR036312 -
Apr10g0827 115 PRINTS Plant phospholipid transfer protein signature 26 42 IPR000528 GO:0006869|GO:0008289
Apr10g0827 115 PRINTS Plant phospholipid transfer protein signature 46 60 IPR000528 GO:0006869|GO:0008289
Apr10g0827 115 PRINTS Plant phospholipid transfer protein signature 67 82 IPR000528 GO:0006869|GO:0008289
Apr10g0827 115 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Apr10g0827 115 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0827 Apr-Chr10 20514487 20515815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0827 4 115 Acyl Lipid Metabolism Gene Families AT5G59320 50.000 3.82e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0827 - - gmx:100776812 131.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2117 4 30175335 30176635 Apr10g0827 10 20514487 20515815 PCT