Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2477 ATGGCTAGCCTCAAGGTTGCATGCGTGGTTGCGGTGATCTGCATGGTCGTGGCGAGTGCACCCATGGCACAGGCTGCGATCACGTGCGGGCAGGTCACGTCGGCCCTCGTTCCGTGCGTCGATTACCTTCAGAAAGGTGGACCACCGCCGGTGGGGTGCTGCAACGGAGTGAGGAGCCTGAACTCCGCCGCGAAGACCACCGCAGACCGCCAGGCTGCGTGCAATTGCCTGAAGCAAGCTGCGGGTGCCATTTCTGGCTTCAATGCCAACAACGCCGCTACACTTCCTGGCAAATGTGGCGTCAACATCCCCTACAAGATCAGCACCTCCACCAACTGCGCCACCATCAAGTTCTGA 357 0.605 MASLKVACVVAVICMVVASAPMAQAAITCGQVTSALVPCVDYLQKGGPPPVGCCNGVRSLNSAAKTTADRQAACNCLKQAAGAISGFNANNAATLPGKCGVNIPYKISTSTNCATIKF 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2477 118 Pfam Protease inhibitor/seed storage/LTP family 29 113 IPR016140 -
Ssu4g2477 118 CDD nsLTP1 27 113 - -
Ssu4g2477 118 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 115 - -
Ssu4g2477 118 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 115 IPR036312 -
Ssu4g2477 118 PANTHER - 1 115 IPR000528 GO:0006869|GO:0008289
Ssu4g2477 118 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Ssu4g2477 118 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Ssu4g2477 118 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Ssu4g2477 118 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Ssu4g2477 118 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Ssu4g2477 118 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Ssu4g2477 118 Gene3D - 26 117 IPR036312 -
Ssu4g2477 118 SMART aai_6 29 113 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2477 Ssu-Chr4 62190092 62191878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2477 4 117 Acyl Lipid Metabolism Gene Families AT2G38540 54.783 2.34e-36 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2477 - - gmx:100306510 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0997 3 23424049 23427731 Ssu4g2477 4 62190092 62191878 PCT