Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01993 ATGGCTAGTTTTTTGAGGTTGTCATGCGTGGTTCTGGTGTGCATGGTCGTGGTGGGTGCACACACTGCGGAAGCAATCACGTGTGGTCAGGTGCAGAGTAGCCTAGCACCGTGCCTTGGATATCTTCAGAACGGTGGTGTTGTTCCCCCAAGGTGCTGCAGCGGCGTTAGGAGCATCGTGAACACGGCCAGGACCACCGCCGACCGCCGCTTAGCTTGCAACTGCTTGAAGAGTGCCGCCGCTGCCATCCGCAGGCTCAACCCTACCAACGCTCAGACTCTCCCCGGAAAGTGTGGAGTTAGCATACCCTACAAGATCAGCACCTCCACCAACTGTGCCAGCATCAAGTGA 351 0.5726 MASFLRLSCVVLVCMVVVGAHTAEAITCGQVQSSLAPCLGYLQNGGVVPPRCCSGVRSIVNTARTTADRRLACNCLKSAAAAIRRLNPTNAQTLPGKCGVSIPYKISTSTNCASIK 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01993 116 Pfam Protease inhibitor/seed storage/LTP family 28 112 IPR016140 -
Cca01g01993 116 Gene3D - 25 116 IPR036312 -
Cca01g01993 116 PANTHER - 1 114 IPR000528 GO:0006869|GO:0008289
Cca01g01993 116 SMART aai_6 28 112 IPR016140 -
Cca01g01993 116 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 114 IPR036312 -
Cca01g01993 116 ProSitePatterns Plant lipid transfer proteins signature. 94 115 IPR000528 GO:0006869|GO:0008289
Cca01g01993 116 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 114 - -
Cca01g01993 116 CDD nsLTP1 26 112 - -
Cca01g01993 116 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Cca01g01993 116 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Cca01g01993 116 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Cca01g01993 116 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Cca01g01993 116 PRINTS Plant phospholipid transfer protein signature 103 114 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01993 Cca-Chr1 46562266 46564610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01993 1 116 Acyl Lipid Metabolism Gene Families AT5G59310 59.829 2.10e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01993 - - gmx:100776812 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01716 07 43182980 43184648 Cca01g01993 01 46562266 46564610 PCT