Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1053 ATGGCAAGTTTGAGGGTTACATGTATGGTTGCATTGATATGCATGGTGATGGTTAGTGCACCAATGGCAGAAGCTTCAGTCTCATGTGGAGCTGTAACTGGTTACCTTGTTCCATGCATTACTTATCTTCAAGGTGGTCCTGGTCCTTCACCAGCATGCTGTGATGGAGTAAAGAAACTTAACGCGGCAGCTGCCACTACCCCTGACCGCAAGGCCGCTTGTAACTGCTTGAAAGGTGCTGCTGGTTCCATTGCTCGTTTGAATAACAACGCCGCCGCAGCTCTCCCCGGCAAATGTGGTGTTCGCATTCCCTACAAGTTTAGCACTTCTACCAACTGTAATAGCATCAAGTTCTAA 357 0.4818 MASLRVTCMVALICMVMVSAPMAEASVSCGAVTGYLVPCITYLQGGPGPSPACCDGVKKLNAAAATTPDRKAACNCLKGAAGSIARLNNNAAAALPGKCGVRIPYKFSTSTNCNSIKF* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1053 118 Gene3D - 26 118 IPR036312 -
Tpr4g1053 118 SMART aai_6 29 113 IPR016140 -
Tpr4g1053 118 CDD nsLTP1 27 114 - -
Tpr4g1053 118 Pfam Protease inhibitor/seed storage/LTP family 29 113 IPR016140 -
Tpr4g1053 118 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 115 - -
Tpr4g1053 118 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Tpr4g1053 118 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Tpr4g1053 118 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Tpr4g1053 118 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Tpr4g1053 118 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Tpr4g1053 118 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Tpr4g1053 118 PANTHER - 1 115 IPR000528 GO:0006869|GO:0008289
Tpr4g1053 118 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 116 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1053 Tpr-Chr4 10218627 10220416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1053 7 117 Acyl Lipid Metabolism Gene Families AT5G59320 53.153 7.01e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1053 - - mtr:MTR_4g027840 167.933