Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01496 . . . . . . . Vimu9g01331 . . Vra9g1075
Pvu10g0210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu9g01332 . . .
Pvu10g0211 . . . . Aev09g0600 . . . . . . . Arst9g01010 . . . . . . . . . . . . . . . . . . . . Lasa4g00263 . . . . . . . . . . . Phco1g01664 . . . . . . Spst4g01498 . . . . . . . Vimu9g01333 . . Vra9g1076
Pvu10g0212 . . Adu09g00764 Aed2g1488 . Ahy19g0961 Ahy9g0736 Aip09g01057 . Amo19g0933 . Apr10g0376 . . . . . Cca01g01261 . . . . . . . . . . Lal19g0082 . Lan1g0883 . . Lasa4g00264 . . . . . . . . . . . . . . Pste6g00563 . . Seca4g10498 . Ssu2g0555 . . . . . Vifa4g01479 Vimu9g01336 . Vivi7g03844 Vra9g1078
Pvu10g0213 . . Adu09g00763 . . Ahy19g0960 Ahy9g0735 Aip09g01056 . Amo19g0932 . . . Bach6g01203 . Bva02g01233 Car07g03197 . . . . . . . . . . . . . . . Lapu10g01023 Lasa4g00265 . . . . Lja3g4431 . Mepo1g04420 Mesa29g05094 . Mtr8g0347 . . . . . . . . Spst4g01500 . . . Trre15g00403 Tsu08g00336 . . Vimu9g01337 . . Vra9g1079
Pvu10g0214 . . Adu02g01891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu9g01340 . . Vra9g1080
Pvu10g0216 Acco07g1701 Accr6g01438 Adu09g00761 Aed2g1490 Aev09g0596 Ahy19g0957 Ahy9g0733 Aip09g01054 Alju05g0480 . . Apr10g0374 Arst9g01009 Bach6g01215 Bisa06g0638 Bva02g01228 Car07g03200 Cca01g01259 Dere11g0500 . Enph10g0981 Glsi07g1678 . . . . . . Lal19g0083 . Lan1g0882 . Lapu10g01020 . Lele37g1117 Lele38g0997 Lele39g0297 Lele40g0936 Lja3g4426 . Mepo1g04423 Mesa29g05097 Mibi04g1689 Mtr8g0344 . Phco1g01668 Prci12g0506 . Pste6g00574 . . Seca4g10496 Spst4g01504 Ssu2g0557 Sto1g2484 . Trre15g00400 Tsu08g00333 Vian9g01251 Vifa4g01481 Vimu9g01341 Viun10g00690 Vivi7g03846 Vra9g1082
Pvu10g0217 . . . Aed2g1496 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g4420 . . . . . . Phco1g01671 . . Pste6g00609 . . . . . . Tpr4g0919 . . . . Vimu9g01345 . . Vra9g1084
Pvu10g0218 . . . Aed2g1499 . . . . . . . . . . . . . Cca01g01257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst4g01508 . . . . . Vian9g01257 . Vimu9g01346 Viun10g00683 . Vra9g1085
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0209 Chr10 3070053 3075109 -
Spst Spst4g01496 Chr4 53629189 53633650 -
Vimu Vimu9g01331 Chr9 21587429 21595255 -
Vra Vra9g1075 Chr9 13702533 13709953 -
Pvu Pvu10g0210 Chr10 3079124 3083741 -
Vimu Vimu9g01332 Chr9 21597573 21605120 -
Pvu Pvu10g0211 Chr10 3085709 3094450 -
Aev Aev09g0600 Chr09 5331450 5341920 -
Arst Arst9g01010 Chr9 10745490 10752758 -
Lasa Lasa4g00263 Chr4 9334789 9336554 -
Phco Phco1g01664 Chr1 54570098 54583379 -
Spst Spst4g01498 Chr4 53770304 53787386 +
Vimu Vimu9g01333 Chr9 21615025 21619065 -
Vra Vra9g1076 Chr9 13717322 13726955 -
Pvu Pvu10g0212 Chr10 3097951 3099892 +
Adu Adu09g00764 Chr09 10741623 10743523 -
Aed Aed2g1488 Chr2 17494367 17496161 -
Ahy Ahy19g0961 Chr19 15019178 15021134 -
Ahy Ahy9g0736 Chr9 11266985 11269177 -
Aip Aip09g01057 Chr09 14972452 14974222 -
Amo Amo19g0933 Chr19 15415550 15417161 -
Apr Apr10g0376 Chr10 9291076 9293123 +
Cca Cca01g01261 Chr01 22187779 22194330 +
Lal Lal19g0082 Chr19 634418 636323 -
Lan Lan1g0883 Chr1 19632133 19635412 +
Lasa Lasa4g00264 Chr4 9343582 9344577 +
Pste Pste6g00563 Chr6 2086861 2101300 -
Seca Seca4g10498 Chr4 240872570 240874105 +
Ssu Ssu2g0555 Chr2 32305473 32308614 -
Vifa Vifa4g01479 Chr4 436106398 436108267 -
Vimu Vimu9g01336 Chr9 21630663 21631861 +
Vivi Vivi7g03844 Chr7 104467617 104469290 -
Vra Vra9g1078 Chr9 13731213 13733437 +
Pvu Pvu10g0213 Chr10 3100597 3106265 -
Adu Adu09g00763 Chr09 10736369 10741260 +
Ahy Ahy19g0960 Chr19 15013965 15018888 +
Ahy Ahy9g0735 Chr9 11261910 11266837 +
Aip Aip09g01056 Chr09 14967197 14972057 +
Amo Amo19g0932 Chr19 15410205 15415164 +
Bach Bach6g01203 Chr6 10577330 10582621 +
Bva Bva02g01233 Chr02 16438363 16443744 -
Car Car07g03197 Chr07 59610881 59615996 +
Lapu Lapu10g01023 Chr10 12045253 12051003 -
Lasa Lasa4g00265 Chr4 9344902 9348853 -
Lja Lja3g4431 Chr3 85747312 85751966 -
Mepo Mepo1g04420 Chr1 51814651 51819913 +
Mesa Mesa29g05094 Chr29 83793897 83799528 +
Mtr Mtr8g0347 Chr8 3955621 3960980 -
Spst Spst4g01500 Chr4 53815208 53819995 +
Trre Trre15g00403 Chr15 2824438 2829087 -
Tsu Tsu08g00336 Chr08 3248400 3253169 -
Vimu Vimu9g01337 Chr9 21633254 21637274 -
Vra Vra9g1079 Chr9 13734528 13738924 -
Pvu Pvu10g0214 Chr10 3106509 3108054 +
Adu Adu02g01891 Chr02 79965271 79970762 -
Pvu Pvu10g0215 Chr10 3112686 3115421 -
Vimu Vimu9g01340 Chr9 21639283 21640170 +
Vra Vra9g1080 Chr9 13739153 13741881 +
Pvu Pvu10g0216 Chr10 3118978 3129108 -
Acco Acco07g1701 Chr07 33279840 33284154 -
Accr Accr6g01438 Chr6 44628722 44632835 -
Adu Adu09g00761 Chr09 10703693 10708189 +
Aed Aed2g1490 Chr2 17521202 17530264 -
Aev Aev09g0596 Chr09 5301401 5306414 +
Ahy Ahy19g0957 Chr19 14977975 14982453 +
Ahy Ahy9g0733 Chr9 11232813 11237228 +
Aip Aip09g01054 Chr09 14931729 14936282 +
Alju Alju05g0480 Chr05 8217756 8222443 +
Apr Apr10g0374 Chr10 9231121 9239471 +
Arst Arst9g01009 Chr9 10738596 10742970 +
Bach Bach6g01215 Chr6 10998226 11001141 +
Bisa Bisa06g0638 Chr06 19172116 19178038 +
Bva Bva02g01228 Chr02 16419283 16423511 -
Car Car07g03200 Chr07 59626682 59632377 -
Cca Cca01g01259 Chr01 22067738 22077788 +
Dere Dere11g0500 Chr11 8409499 8415927 +
Enph Enph10g0981 Chr10 12355513 12361094 +
Glsi Glsi07g1678 Chr07 55589599 55602255 -
Lal Lal19g0083 Chr19 637571 643918 -
Lan Lan1g0882 Chr1 19623681 19630910 +
Lapu Lapu10g01020 Chr10 12017658 12028559 +
Lele Lele37g1117 Chr37 20817648 20827182 -
Lele Lele38g0997 Chr38 21492959 21498376 -
Lele Lele39g0297 Chr39 2031867 2036126 +
Lele Lele40g0936 Chr40 19890030 19895061 -
Lja Lja3g4426 Chr3 85613507 85621083 +
Mepo Mepo1g04423 Chr1 51827503 51832876 -
Mesa Mesa29g05097 Chr29 83810659 83815863 -
Mibi Mibi04g1689 Chr04 45146585 45150727 -
Mtr Mtr8g0344 Chr8 3908193 3914085 +
Phco Phco1g01668 Chr1 54610719 54619120 -
Prci Prci12g0506 Chr12 4398335 4403220 +
Pste Pste6g00574 Chr6 2160300 2169172 -
Seca Seca4g10496 Chr4 240850796 240856448 +
Spst Spst4g01504 Chr4 53838357 53845800 -
Ssu Ssu2g0557 Chr2 32363580 32379653 -
Sto Sto1g2484 Chr1 32359036 32361169 +
Trre Trre15g00400 Chr15 2812568 2817069 +
Tsu Tsu08g00333 Chr08 3234548 3240479 +
Vian Vian9g01251 Chr9 26466099 26480631 -
Vifa Vifa4g01481 Chr4 436859805 436864996 -
Vimu Vimu9g01341 Chr9 21649254 21651614 -
Viun Viun10g00690 Chr10 7042877 7053252 +
Vivi Vivi7g03846 Chr7 104473492 104478748 -
Vra Vra9g1082 Chr9 13750024 13762566 -
Pvu Pvu10g0217 Chr10 3142044 3143369 +
Aed Aed2g1496 Chr2 17637525 17638246 -
Lja Lja3g4420 Chr3 85563329 85565216 -
Phco Phco1g01671 Chr1 54682095 54683417 +
Pste Pste6g00609 Chr6 2277608 2279292 -
Tpr Tpr4g0919 Chr4 8785982 8787660 -
Vimu Vimu9g01345 Chr9 21716400 21717948 +
Vra Vra9g1084 Chr9 13801150 13802475 +
Pvu Pvu10g0218 Chr10 3151429 3155830 +
Aed Aed2g1499 Chr2 17658444 17660334 +
Cca Cca01g01257 Chr01 21874407 21885796 +
Spst Spst4g01508 Chr4 53945515 53947139 +
Vian Vian9g01257 Chr9 26600301 26602250 +
Vimu Vimu9g01346 Chr9 21723406 21725676 +
Viun Viun10g00683 Chr10 6875764 6878054 +
Vra Vra9g1085 Chr9 13820929 13823527 +