Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca01g01259 | ATGTACGCTGATCGTGTGGAGAGTGGAGGACGGAGGTCCGTGAAGGAACGCCTTAATGGGAATGTTGTCAGTAGTTCTACTCGGCAGCATCAACGCCAAGTCACCGGCAAGAGGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTTCACGATGATGAACCTCGGATCACTAATCGCAAAGTTAGTGCTCAAGATCTTCGCCTCAAGCTTCGAAGGAAAGGTCTTCAACCAGCAGCTCAGAGTGGAAAGAGTTCTGCTCCAAACACGTGGGATCTCCGTGAAAGGCTATCAGGGACAATGAAACCACAACCTACAAATTCTGACCCTCCAAAGTCAAAAGTTGTTAAACCAAGCAGCAAAAATGTCAGTGTTGAGGCCCCTGAAGTGCAGCTCAAAAGGCCAGCTGACCCAGCTCCTAAAAGGTCACGCAAGGTCGGTAATTCAGTTGATGATTTTTTGCAGTCCTTGGGTCTCGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAGTTGATATGACAGCACTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGCATACCAATGGGACCAAGAAAGAAGATACTTTTAGCGCTGGAGTCGAAGTCTAACATTTAG | 624 | 0.4663 | MYADRVESGGRRSVKERLNGNVVSSSTRQHQRQVTGKRSRQDDKWEHDLFHDDEPRITNRKVSAQDLRLKLRRKGLQPAAQSGKSSAPNTWDLRERLSGTMKPQPTNSDPPKSKVVKPSSKNVSVEAPEVQLKRPADPAPKRSRKVGNSVDDFLQSLGLEKYLITFQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESKSNI | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca01g01259 | 207 | MobiDBLite | consensus disorder prediction | 98 | 147 | - | - | |
| Cca01g01259 | 207 | MobiDBLite | consensus disorder prediction | 35 | 65 | - | - | |
| Cca01g01259 | 207 | Gene3D | - | 148 | 207 | IPR013761 | - | |
| Cca01g01259 | 207 | MobiDBLite | consensus disorder prediction | 100 | 126 | - | - | |
| Cca01g01259 | 207 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
| Cca01g01259 | 207 | PANTHER | PA-PL1 PHOSPHOLIPASE FAMILY | 1 | 141 | - | - | |
| Cca01g01259 | 207 | PANTHER | PA-PL1 PHOSPHOLIPASE FAMILY | 126 | 193 | - | - | |
| Cca01g01259 | 207 | CDD | SAM_superfamily | 149 | 202 | - | - | |
| Cca01g01259 | 207 | PANTHER | OSJNBA0060P14.15 PROTEIN | 126 | 193 | - | - | |
| Cca01g01259 | 207 | PANTHER | OSJNBA0060P14.15 PROTEIN | 1 | 141 | - | - | |
| Cca01g01259 | 207 | SMART | SAM_4 | 142 | 207 | IPR001660 | GO:0005515 | |
| Cca01g01259 | 207 | Pfam | SAM domain (Sterile alpha motif) | 148 | 202 | IPR001660 | GO:0005515 | |
| Cca01g01259 | 207 | ProSiteProfiles | SAM domain profile. | 145 | 199 | IPR001660 | GO:0005515 | |
| Cca01g01259 | 207 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
| Cca01g01259 | 207 | SUPERFAMILY | SAM/Pointed domain | 147 | 202 | IPR013761 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca01g01259 | Cca-Chr1 | 22067738 | 22077788 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca01g01259 | 40 | 204 | Glycosyltransferase | AT3G07170 | 57.738 | 1.10e-57 | 178 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca01g01259 | - | - | gmx:100784706 | 328.176 |