Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0557 ATGTACGCTGATCGCGTGGAGGGTGGAGCGCGGAGGTCCGTGAAGGAACGCCTCAATGGGAATGGTATCAGTGGCTCTACCCGGCAGCAGCAACGTCAAATCACCGGCAGCAAGAGGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTTGACCGTGATGAATCCCGGATCACTAATCACAAAGTTAGTGCTCAAGATCTTCGCCTCAAGCTTCAAAGGAAAGGTCTTCAACCTGCAGCTCAGAGTGGAAAGAGTTCTGCTCCAAACGTGCGGGATCTCCGTGAAAGGCTTTCAGGGACAATGACACCACAACCTACAAATGCTGATCTGCCAAAGTCAAAAGTTGTTAAACCGAGCACTAAAAATGTTGGCATTGAGGCACCTGCAGTGCAGATCAAAAGGCCAGCTGACTCAGCTCCTAAAAAGTTGTCACGGAAGGCTGATACTTCAGTTGATGAATTTTTGCGGTCCTTGGGTCTTGAAAAGTATCTCATAACTTTTCAGGCTGAAGAAGTTGATATGACAGCTCTCAATCATATGACTGATGAAGATCTCAAGGCTATGGGCATACCAATGGGACCAAGAAAGAAGATACTTTTAGCATTGGAGTAG 615 0.4732 MYADRVEGGARRSVKERLNGNGISGSTRQQQRQITGSKRSRQDDKWEHDLFDRDESRITNHKVSAQDLRLKLQRKGLQPAAQSGKSSAPNVRDLRERLSGTMTPQPTNADLPKSKVVKPSTKNVGIEAPAVQIKRPADSAPKKLSRKADTSVDEFLRSLGLEKYLITFQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0557 204 Pfam SAM domain (Sterile alpha motif) 148 203 IPR001660 GO:0005515
Ssu2g0557 204 CDD SAM_superfamily 151 204 - -
Ssu2g0557 204 Gene3D - 149 204 IPR013761 -
Ssu2g0557 204 MobiDBLite consensus disorder prediction 1 48 - -
Ssu2g0557 204 PANTHER OSJNBA0060P14.15 PROTEIN 126 193 - -
Ssu2g0557 204 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 126 193 - -
Ssu2g0557 204 MobiDBLite consensus disorder prediction 100 129 - -
Ssu2g0557 204 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 107 - -
Ssu2g0557 204 PANTHER OSJNBA0060P14.15 PROTEIN 1 107 - -
Ssu2g0557 204 ProSiteProfiles SAM domain profile. 147 201 IPR001660 GO:0005515
Ssu2g0557 204 MobiDBLite consensus disorder prediction 19 36 - -
Ssu2g0557 204 SMART SAM_4 144 204 IPR001660 GO:0005515
Ssu2g0557 204 SUPERFAMILY SAM/Pointed domain 148 203 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0557 Ssu-Chr2 32363580 32379653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0557 41 203 Glycosyltransferase AT3G07170 57.576 1.64e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0557 - - gmx:100784706 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1432 3 36887002 36893616 Ssu2g0557 2 32363580 32379653 PCT