Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01332 AACCGTGACCAGAGAGTCCGACGCACCACCACGCAGCGAAGCGGCCATGATTTTTGTGTGACCGGAGAAGAGAACTACACGGCGCGGCAAATAGAAACCAGAGCAGCGAACCCTAATCTGTCAGGTGAGGAGAAGAAGGAACCTAATTGCTGCTCAATGTTCTATCTCAGTAAAATTGAACATAAATTGCCCCTGCCTCCTCCTCGACTTGTTCTTCCCATTCGAGAAGCCATTCACATGGAGCTTGAAAAACTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTTTGCATTTCTGTATATGATATCATATCCATTGACGGTGGATTTATCTTCCCAGGTGATGGGGCTCCGACCTATACGGTTGTATTCAATTTAATAATGTTTCGTCCATTTGTGGGGGAAATTATTACTGCGAGGCTTATTTCATCTGATTCTAATGGCTTACAATCAAAAGACGGGGGAGGCAGTGAAGAGGTAGAAAAAAACAAAGATTGTTCTGAGAACATTGTGACTATAGAGGTTCTAATTGCTGAGACAAGTGAGAGCATGGATGTAGACATGGAGGACTCGAGTGATGAAGGCTGCATCGATTTTGCCAATGCTGTGCAAGAAGCTGCAAGTGAGGTCAGAAGGTTTCTGTCTATAAAGCTGAGTCGTTTAATCATTGACAAGAGAACAGGGGGCAAAGGGAGGAAAGTATGGAAGGAGAATCTTTTACAGTATCCAGAAAAGTTAAAGCATCACGGACAAGTGCAGTGGCTGCTGTTCTACAATATCTGCCAGTTTATATGGGGAGTAAGTCTTGGATTCTTTGATGATATTTATGTCCCTGCACATCATATGCCCTGGCCAAACCACTTTGTTGAGGATGAACAAGGAAAAAGGGTATCCTTTAGCGAAGAGTCAACAACTAATTCTTTGAGGAAAGGCGTATGGTTTTGGGATTTTAACGAACAAGAATATCCTATTCAAGAAACTGACGTGATCAAATTTCGTGTTCAAAATGTGAGTTATCCACAAATTCCGGTCGAGCAACCAAAAGAATCAAAGCCATTTGCACCTATGTTGGTTACTGGTTCGTTAGATCATGATGGTTTAGGCCCTGTTTCTTGGTGGTCAGCAGAAGAGATTGAGGTTGATGATGAGTAA 1152 0.4262 NRDQRVRRTTTQRSGHDFCVTGEENYTARQIETRAANPNLSGEEKKEPNCCSMFYLSKIEHKLPLPPPRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIISIDGGFIFPGDGAPTYTVVFNLIMFRPFVGEIITARLISSDSNGLQSKDGGGSEEVEKNKDCSENIVTIEVLIAETSESMDVDMEDSSDEGCIDFANAVQEAASEVRRFLSIKLSRLIIDKRTGGKGRKVWKENLLQYPEKLKHHGQVQWLLFYNICQFIWGVSLGFFDDIYVPAHHMPWPNHFVEDEQGKRVSFSEESTTNSLRKGVWFWDFNEQEYPIQETDVIKFRVQNVSYPQIPVEQPKESKPFAPMLVTGSLDHDGLGPVSWWSAEEIEVDDE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01332 383 CDD RNAP_III_Rpc25_N 54 133 - -
Vimu9g01332 383 Gene3D - 264 374 IPR012340 -
Vimu9g01332 383 FunFam Predicted protein 265 373 - -
Vimu9g01332 383 Gene3D - 53 131 IPR036898 -
Vimu9g01332 383 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 60 116 IPR005576 GO:0006351
Vimu9g01332 383 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 53 148 IPR045113 GO:0006352
Vimu9g01332 383 Pfam RNA polymerase III subunit Rpc25 267 373 IPR013238 -
Vimu9g01332 383 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 53 130 IPR036898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01332 Vimu-Chr9 21597573 21605120 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01332 K03022 - gmx:100800770 184.882