Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0297 ATGTATTCTGATCGGGTGGATACTGGGGCGAGGAGGTCAGTAAAGGAACGTCTTAATCGCAATTTTGTCATTGACTCTACCCGCCCGCGGCAAATCACTGGAAAGAGGCAGAGACAAGATGACAAATGGGAGCATGATCTTTTTGAGCATGATGAACCACGAGTTTCTAAACGCCATGTTGGTGGTCAAGATCTTCGCCTGAAGCTTCAGAAAAAGGGTTTTCAATCAGCTGCTCAGAGTGGCAAGAATTCTGTTCCAGGTATGCATGATCTACGTGAAAAGTTATCAGGGACAATGACTCAACAGCCTAAAAACTCAGATCCACCAAAGTCGAAAGTGGAAGTTGTTAAATCAAGCAGTAAAAGTGTCATTGTTGAGGCTTCTGCACCACATGTTAAAAAAGCAACTAACCCAGCTCCCAAAAAGAAGACATCACAAAAGATTGGAAGTTCAGTGGATGAATTTTTGCATTCCCTGGGTCTTGAGAAGTATCTCATAACTTTTCAAGCTGAAGAAGTTGATATGACAGCTCTCATGCACATGACTGATGATGATCTGAAGGTCATGGGAATACCAATGGGGCCAAGGAAGAAGATACTTTTAGCCTTAGAGTCAAAGGGTTGA 624 0.4295 MYSDRVDTGARRSVKERLNRNFVIDSTRPRQITGKRQRQDDKWEHDLFEHDEPRVSKRHVGGQDLRLKLQKKGFQSAAQSGKNSVPGMHDLREKLSGTMTQQPKNSDPPKSKVEVVKSSSKSVIVEASAPHVKKATNPAPKKKTSQKIGSSVDEFLHSLGLEKYLITFQAEEVDMTALMHMTDDDLKVMGIPMGPRKKILLALESKG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0297 207 CDD SAM_superfamily 151 204 - -
Lele39g0297 207 MobiDBLite consensus disorder prediction 1 62 - -
Lele39g0297 207 PANTHER SCP160 72 203 - -
Lele39g0297 207 SMART SAM_4 144 207 IPR001660 GO:0005515
Lele39g0297 207 FunFam Sterile alpha motif domain-containing protein 149 207 - -
Lele39g0297 207 MobiDBLite consensus disorder prediction 1 23 - -
Lele39g0297 207 Pfam SAM domain (Sterile alpha motif) 150 204 IPR001660 GO:0005515
Lele39g0297 207 MobiDBLite consensus disorder prediction 31 62 - -
Lele39g0297 207 Gene3D - 149 207 IPR013761 -
Lele39g0297 207 ProSiteProfiles SAM domain profile. 147 201 IPR001660 GO:0005515
Lele39g0297 207 MobiDBLite consensus disorder prediction 71 90 - -
Lele39g0297 207 SUPERFAMILY SAM/Pointed domain 148 204 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0297 Lele-ChrLele39 2031867 2036126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0297 37 206 Glycosyltransferase AT3G07170 63.529 1.19e-66 201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1117 37 20817648 20827182 Lele39g0297 39 2031867 2036126 hybridization
Lele38g0997 38 21492959 21498376 Lele39g0297 39 2031867 2036126 hybridization