Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00400 ATGTATGCTGATCGAGTTGAAAGTGGAGCTAGGAGGTCTGTCAAGGAACGTCTTGATGGGAGCATCGGTGTTTCTACTCGGCAGCAACGCCAAGTTACTGGCAAGAGGTCGAGGCAAGATGACAAGTGGGAACATGATCTATATGATAATGATGAACAACCCCAGATCACTAATCGCAAAGTTGCTGGTCAAGATCTTCGTCATAAGCTTCAAAAGAAAGGTCTTCAACCAGCAACTCGGAGTGGAAAAAGTTCTGCTCCAAACATCAGGGATCTTCGCGAAAGACTATCAGGGACAATGAATCAACAACCTAAAAACTCTGATCCACCAAAGTCAAAAGTGATTGCTAAACCGAGCAGTAAAAGTGTTGGTGCTGAGGCTCCTGTAGTAAAAAAACCAGCTAAACCAGCTCCTAAAAAGGCACGGAAGGCTGATAATACTACAGTGGATGATTTTTTGCTATCCTTGGGTCTCGAGAAGTATCTCATAACTTTTCAAGCTGAAGAAGTTGATATGGCTGCTCTCAAACATATGACTGATGAGGACCTCAAGGTTATGGGTATACCAATGGGGCCACGAAAGAAGATACTTTTAGCATTGGAGTCAAACGTCTGA 615 0.4358 MYADRVESGARRSVKERLDGSIGVSTRQQRQVTGKRSRQDDKWEHDLYDNDEQPQITNRKVAGQDLRHKLQKKGLQPATRSGKSSAPNIRDLRERLSGTMNQQPKNSDPPKSKVIAKPSSKSVGAEAPVVKKPAKPAPKKARKADNTTVDDFLLSLGLEKYLITFQAEEVDMAALKHMTDEDLKVMGIPMGPRKKILLALESNV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00400 204 Gene3D - 145 204 IPR013761 -
Trre15g00400 204 ProSiteProfiles SAM domain profile. 144 204 IPR001660 GO:0005515
Trre15g00400 204 FunFam Sterile alpha motif domain-containing protein 146 204 - -
Trre15g00400 204 MobiDBLite consensus disorder prediction 95 109 - -
Trre15g00400 204 MobiDBLite consensus disorder prediction 1 144 - -
Trre15g00400 204 MobiDBLite consensus disorder prediction 33 53 - -
Trre15g00400 204 Pfam SAM domain (Sterile alpha motif) 146 201 IPR001660 GO:0005515
Trre15g00400 204 MobiDBLite consensus disorder prediction 1 18 - -
Trre15g00400 204 SUPERFAMILY SAM/Pointed domain 146 201 IPR013761 -
Trre15g00400 204 SMART SAM_4 141 204 IPR001660 GO:0005515
Trre15g00400 204 CDD SAM_superfamily 149 201 - -
Trre15g00400 204 PANTHER SCP160 99 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00400 Trre-Chr15 2812568 2817069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00400 38 202 Glycosyltransferase AT3G07170 60.843 1.22e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00400 - - gmx:100784706 279.256