Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00574 atgagctttctcccagtcgcgcatcctctgacgccatcgaccagccaccgcgcatcgtccgacgccgtcaaccagccaccgcgcatccttcggcaagttctccggcgccgattctcctgcttgcgttctctctcacattcttgcacattctccgacgagttctccggcgccgattctcctcctcgtgttctctcctcctcgcgttctcgatctcacgttttcattcacccattctctccttcttgctctgtgaaggctgagataagggcagttatggatggaaagaagcaaaagcaaactgaaacgtttaaaaaagtaatgcaagatattgaagaacattttgaagaaaggttcatggaaatgggaagttcgatgtttaaatctaagctacctcagaaagaggtggagtacactaatgagttaatgcagccactaaaggatcagtgggcaaattttgggtgttcgttaatgttagatgtttggacggatagaaaacaaagaagcatcataaactttttggtgaactcgtcttctgggacaatgttcttaaaatctgttgatgcatctgactatgtaaagaccggagaaaagatgtttgagttattggattctattgtggatgagattggagaggagaaggttgttcaagttataacggacagcgaaatctatggttcagaaactccttatttgcaacaacttgcaattaggatccttagcttgacatgtagtgcttcgggttgtgaatgcaattggagtgtgtttaagcaagttcatactaagagaagaaatagactcgagcatcaaagactacatgacttggtatttgtcaagtataatcaagcactccatcgaagatggatggagaagaaggtgaagatgagagggttaagtgaaggagatgatgaccttacttggaatcaagtttatgaagtttcgggacttaatgagcctagacaatacactaggcatcataaaaggaaacaatttgcaattggagatgggcaagtaggaacatattctaatccttctaagagagccaaaggagtagcttcaaagaagaaggggaaaagagttgttgttgaagaagctaaatcattagaatattttgattctagcagtgacgaggaggaattagtgtcaaatgctaatttggcacattcagatggagaagaagctgaaggattcttggatgagcagtcgaggcaagatgacaagtgggaacatgatctctttgatgacgataaaccccagatcactaatcgcaaagttagtgctctggatcttcgcctcaagcttcagaggaaaggtcttctacctgcagctcagagtggaaagagttctactccaaacatgcgggatctccgtgaaaggctatcggggacgatgaaacctcaacctacaaatactgatccgccaaagtcaaaagttgctaattcaggcagtaaaaatgttggtgctgagacctcttcagtgcagatcaaaaggtccactaaccctgctcctaaaaagtcacggaaggctgatacttctgttgatggatttttgcggtcgttgggtcttgaaaagtatatcataacttttcaggctgaagaagttgatatgacagccctaaatcatatgactgacgaagatctcaaggctatgggtatacctatgagaaaaccttcactagtattttctaagcctctgcaggctctacctaagtattcttccaaaatgccttttcagacttcacatccttag 1746 0.0 MSFLPVAHPLTPSTSHRASSDAVNQPPRILRQVLRRRFSCLRSLSHSCTFSDEFSGADSPPRVLSSSRSRSHVFIHPFSPSCSVKAEIRAVMDGKKQKQTETFKKVMQDIEEHFEERFMEMGSSMFKSKLPQKEVEYTNELMQPLKDQWANFGCSLMLDVWTDRKQRSIINFLVNSSSGTMFLKSVDASDYVKTGEKMFELLDSIVDEIGEEKVVQVITDSEIYGSETPYLQQLAIRILSLTCSASGCECNWSVFKQVHTKRRNRLEHQRLHDLVFVKYNQALHRRWMEKKVKMRGLSEGDDDLTWNQVYEVSGLNEPRQYTRHHKRKQFAIGDGQVGTYSNPSKRAKGVASKKKGKRVVVEEAKSLEYFDSSSDEEELVSNANLAHSDGEEAEGFLDEQSRQDDKWEHDLFDDDKPQITNRKVSALDLRLKLQRKGLLPAAQSGKSSTPNMRDLRERLSGTMKPQPTNTDPPKSKVANSGSKNVGAETSSVQIKRSTNPAPKKSRKADTSVDGFLRSLGLEKYIITFQAEEVDMTALNHMTDEDLKAMGIPMRKPSLVFSKPLQALPKYSSKMPFQTSHP 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00574 581 Gene3D - 509 558 IPR013761 -
Pste6g00574 581 Pfam SAM domain (Sterile alpha motif) 508 551 IPR001660 GO:0005515
Pste6g00574 581 Pfam Protein of unknown function (DUF 659) 126 222 IPR007021 -
Pste6g00574 581 MobiDBLite consensus disorder prediction 7 24 - -
Pste6g00574 581 MobiDBLite consensus disorder prediction 462 499 - -
Pste6g00574 581 PANTHER OSJNBA0013A04.12 PROTEIN 126 220 - -
Pste6g00574 581 ProSiteProfiles SAM domain profile. 507 551 IPR001660 GO:0005515
Pste6g00574 581 MobiDBLite consensus disorder prediction 1 24 - -
Pste6g00574 581 Pfam hAT family C-terminal dimerisation region 225 280 IPR008906 GO:0046983
Pste6g00574 581 CDD SAM_superfamily 511 551 - -
Pste6g00574 581 MobiDBLite consensus disorder prediction 460 510 - -
Pste6g00574 581 SUPERFAMILY SAM/Pointed domain 508 553 IPR013761 -
Pste6g00574 581 SUPERFAMILY Ribonuclease H-like 223 285 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00574 Pste-Chr6 2160300 2169172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00574 402 553 Glycosyltransferase AT3G07170 59.091 1.21e-49 168