Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01664 ATGACTTTTTTTTTTCTTTGCAGTCTATCATCTTCTTTTATAAAAATGTTTGTTCCAACAGTGAACCAAAAGTTGCTTGAAGACCTTGAAGTAATGGGATTTCCAAAGGCCCGGGCAACCAGAGCACTTCATTATTCTGGCAATAACAGCTTAGAGGATGCTATAAATTGGATCGTTGATCATGAGAATGACATTGATATTGATGAGATGCCATTGGTAGATGTAGACATTGAGGTAGAGTCCACTGAGTCGTTCCCCATCTCAGAAGAAATGAGAATCAAAGCACAGAGTTTAAGGGAACAAGAACGTAAGAGGAAAGAGCAGGAAGAGAAAAGATTGGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAGAGACTCCTAGAAGCAAAGCGAATTGCTGAAGAAAATGAAAGGAAACGGGATTTATCCCTGAGAAAAGCAGAAAAAGAAGAAGCGAAAAGAGCTAGAGAGAGAGTTTTACAGAAACTAGAGCAGGATAAGTTAAATAGAAGATTTAAGCAAGGATTGCCTTTAGAAGTCCTAGCAACTGTCAGATCTTCTGCTACTAAAATACAACAGGAAAAGGAGTTAAATCCTGTTTATACAACCACAAAATCTGAGCAGTTAAGAGAATGTCTGAGGAATCTGAAGCGTAACCATCAGGGTAAGGATGCCAAAGTCAGAAGGGCCTTTCAAACACTGCTAGTATATATTGGAAATGTTGCCAAGAATCCCGAGGAGGAAAAGTACAGGAAAATACGACTGAGTAACCCATTATTCCTGGATAGAGTTGGAAGTTTAAATGGCAGTGTAGAGTTTCTTGAGCTATGTGGTTTTGAGAGAACTGGTGACTTCTTGCTTCTTCCTCAAGAAAAGATTGACATGGCACTGCTGAATTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAACCCTTTCTTTGGAGTTTTAAGGAATAAGAATTTTAAAATTCGCGAGCGGAGCTGCGAGCGCGGAGAGAACCGCCACGAGAGAGCACGACGCGCCACCAGGCAGCAAAACGACGGTGAGTTTGGCGTGACCGGAGAAGAGAACGTCACGGTGCTGCGTATAGGGAGAACGGCGAACCCTAATCCGCGAGGCTCAATGTTCTATCTCAGTAAAATTGAACACAAATTGCCCCTGCCTCCCACTCGTCTTGTTCTTCCCATTCGAGAAGCTATTCACATGGAGCTTGAAAAACTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTTTGCATTTCTGTCTATGATATCAGATCCATTGACGGTGGGTTTATCTTCCCAGGTGATGGGGCTCCAACCTATACGGTTGTATTCAATTTAATTATGTTTCGTCCATTTGTGGGGGAGATTATTACTGCAAAGCTTATTTCTTCTGATTCTGATGGCTTACGATTAACTCTTGGATTCTTTGAGGATATTTATGTCCCTGCACATCATATGCCCTACCCAAACCACTTTGTTGAGGATGAACAAGGGAAAAGGAAAGGCGTATGGTATTGGGATTTTAACGAACAAGAATATCCTATTCAAGAATCTGATGTGATTAAATTTCGAGTTCAAAATGTGAGTTATCCGCAGATTCCAGTTGAGCAACCAAAAGAATCAAAGCCATTTGCGCCCATGTTGGTTACTGGATCATTAGATCATGATGGTCTAGGCCCTGTTTCTTGGTGGTGTGCAGAAGAGATTGAGGTTGATGATGAGTAA 1740 0.4144 MTFFFLCSLSSSFIKMFVPTVNQKLLEDLEVMGFPKARATRALHYSGNNSLEDAINWIVDHENDIDIDEMPLVDVDIEVESTESFPISEEMRIKAQSLREQERKRKEQEEKRLEREREKERIQAGKRLLEAKRIAEENERKRDLSLRKAEKEEAKRARERVLQKLEQDKLNRRFKQGLPLEVLATVRSSATKIQQEKELNPVYTTTKSEQLRECLRNLKRNHQGKDAKVRRAFQTLLVYIGNVAKNPEEEKYRKIRLSNPLFLDRVGSLNGSVEFLELCGFERTGDFLLLPQEKIDMALLNSAGFVLNSAMTNPFFGVLRNKNFKIRERSCERGENRHERARRATRQQNDGEFGVTGEENVTVLRIGRTANPNPRGSMFYLSKIEHKLPLPPTRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFVGEIITAKLISSDSDGLRLTLGFFEDIYVPAHHMPYPNHFVEDEQGKRKGVWYWDFNEQEYPIQESDVIKFRVQNVSYPQIPVEQPKESKPFAPMLVTGSLDHDGLGPVSWWCAEEIEVDDE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01664 579 MobiDBLite consensus disorder prediction 333 353 - -
Phco1g01664 579 CDD UBA_PUB_plant 20 68 - -
Phco1g01664 579 CDD RNAP_III_Rpc25_N 379 458 - -
Phco1g01664 579 SUPERFAMILY PUG domain-like 203 315 IPR036339 -
Phco1g01664 579 SUPERFAMILY Nucleic acid-binding proteins 456 565 IPR012340 -
Phco1g01664 579 Pfam PUB domain 228 296 IPR018997 -
Phco1g01664 579 Coils Coil 134 171 - -
Phco1g01664 579 FunFam Predicted protein 457 569 - -
Phco1g01664 579 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 378 455 IPR036898 -
Phco1g01664 579 SMART uba_6 22 60 IPR015940 -
Phco1g01664 579 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 385 441 IPR005576 GO:0006351
Phco1g01664 579 MobiDBLite consensus disorder prediction 96 119 - -
Phco1g01664 579 Gene3D - 212 309 - -
Phco1g01664 579 Gene3D - 378 456 IPR036898 -
Phco1g01664 579 CDD PUB_UBA_plant 215 319 - -
Phco1g01664 579 SUPERFAMILY UBA-like 11 72 IPR009060 GO:0005515
Phco1g01664 579 Coils Coil 91 123 - -
Phco1g01664 579 SMART PGNneu 231 292 - -
Phco1g01664 579 Gene3D - 23 68 - -
Phco1g01664 579 MobiDBLite consensus disorder prediction 333 347 - -
Phco1g01664 579 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 20 61 IPR015940 -
Phco1g01664 579 PANTHER F13M7.16 PROTEIN 15 319 - -
Phco1g01664 579 Pfam UBA/TS-N domain 22 58 IPR015940 -
Phco1g01664 579 Gene3D - 457 569 IPR012340 -
Phco1g01664 579 Pfam RNA polymerase III subunit Rpc25 460 569 IPR013238 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01664 Phco-Chr1 54570098 54583379 Dispersed