Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi07g1678 | ATGTATGCTGATCGGGTGGAGACTGGAACGAGGAGGTCAGTGAAGGAACGTCTTAATGGGAATTTTGTCAGTGACCCTAATCGGCAACGACCAATCGCCGGAAAGAGGATGAGACAAGATGACAAGTGGGAGCATGATCTCTTTGAGGGTGATGAACCACGAGTTTCTAATCGCCAAGTTACTGCTCAGGATCTTCGTCTGAAGCTTCAAAAGAAGGGTCTTCAACCAGCATTTAAGCGTGGAAAGAATTCTGTTCCAGGTGTGCATGATCTACGTGAAAGGTTATCAGGGACAATGAAACCACAGCCTAAAAACTCTGACCCACCAAAGTCAAAAGTGGAACTTGTTAAACCAAGCAGTAAAAGTGTCATTGTTGAGGCACCTGCATCACAGATTAAAAGAGCAGCTAACCCAGCTCCCAAAAAGAAGGCATCACAAAAGGCTGATACTTCAGTGGATGAGTTTTTGCAGTCCTTGGGTCTTGAGAAGTATCTCATAACTTTTCAAGCTGAAGAAGTTGATATGGCAGCCCTCATGCACATGACTGATGATGATTTTAAGGCTATGGGTATACCAATGGGGCCAAGGAAGAAGATACTTTTAGCTTTAGAGTCGAAGGGTTGA | 624 | 0.4439 | MYADRVETGTRRSVKERLNGNFVSDPNRQRPIAGKRMRQDDKWEHDLFEGDEPRVSNRQVTAQDLRLKLQKKGLQPAFKRGKNSVPGVHDLRERLSGTMKPQPKNSDPPKSKVELVKPSSKSVIVEAPASQIKRAANPAPKKKASQKADTSVDEFLQSLGLEKYLITFQAEEVDMAALMHMTDDDFKAMGIPMGPRKKILLALESKG | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi07g1678 | 207 | PANTHER | SCP160 | 99 | 203 | - | - | |
| Glsi07g1678 | 207 | FunFam | Sterile alpha motif domain-containing protein | 149 | 207 | - | - | |
| Glsi07g1678 | 207 | Pfam | SAM domain (Sterile alpha motif) | 146 | 204 | IPR001660 | GO:0005515 | |
| Glsi07g1678 | 207 | Gene3D | - | 149 | 207 | IPR013761 | - | |
| Glsi07g1678 | 207 | SMART | SAM_4 | 144 | 207 | IPR001660 | GO:0005515 | |
| Glsi07g1678 | 207 | CDD | SAM_superfamily | 151 | 204 | - | - | |
| Glsi07g1678 | 207 | MobiDBLite | consensus disorder prediction | 78 | 119 | - | - | |
| Glsi07g1678 | 207 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Glsi07g1678 | 207 | SUPERFAMILY | SAM/Pointed domain | 149 | 204 | IPR013761 | - | |
| Glsi07g1678 | 207 | ProSiteProfiles | SAM domain profile. | 147 | 201 | IPR001660 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi07g1678 | Glsi-ChrGlsi07 | 55589599 | 55602255 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi07g1678 | 38 | 206 | Glycosyltransferase | AT3G07170 | 63.314 | 1.88e-67 | 203 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi06g1620 | 06 | 62109908 | 62120044 | Glsi07g1678 | 07 | 55589599 | 55602255 | CCT |