Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0936 ATGTATTCTGATCGGGTGGAAACTGGAGCGAGGAGGTCAATAAAGGAACGTCTTAATGGCAATTTTGTCAGTGACTCTACCCGCTCGCGGCAAATCACTGGAAAGAGGCTGAGACAAGATGACAAATGGGAGCATGATCTTTTTGAGGATGATGAACCACGGGTTTCTAAACGCCAAGTTGGTGGTCAAGATCTTCGCCTGAAGCTTCAGAAAAAGGGTCTTCAATCAGCTGCTCAGAGTGGAAAGAATTCTGTTCCAGGTATGCGTGATCTACGTGAAAAGTTATCAGGGACGATGACTCAACAACCTAAAATCTCAGATCCACCAAAGTCGAGAGTGGAAGTTGTTAAACCAAGCAGTAAAAGTGTCATTGTTGAGGCTCCTGTGCCACATAATAAAAGAGCAACTAACCCAGCTCCCAAAAAGAAGGCATCACAAAAGACTGGTACTTCAGTGGATGAATTTTTGCTTTCCCTGGGTCTTGAGAAGTATCTCATAAATTTTCAGGCTGAAGAAGTTGATATGACAGCTCTTATGCACATGACTGATGATGATCTCAAGGTCATGGGAATACCGATGGGGCCAAGGAAGAAGATACTTTTAGCTTTAGAGTCAAAGGGTTGA 624 0.4359 MYSDRVETGARRSIKERLNGNFVSDSTRSRQITGKRLRQDDKWEHDLFEDDEPRVSKRQVGGQDLRLKLQKKGLQSAAQSGKNSVPGMRDLREKLSGTMTQQPKISDPPKSRVEVVKPSSKSVIVEAPVPHNKRATNPAPKKKASQKTGTSVDEFLLSLGLEKYLINFQAEEVDMTALMHMTDDDLKVMGIPMGPRKKILLALESKG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0936 207 CDD SAM_superfamily 151 204 - -
Lele40g0936 207 SUPERFAMILY SAM/Pointed domain 147 204 IPR013761 -
Lele40g0936 207 MobiDBLite consensus disorder prediction 1 147 - -
Lele40g0936 207 MobiDBLite consensus disorder prediction 31 65 - -
Lele40g0936 207 PANTHER SCP160 101 203 - -
Lele40g0936 207 Pfam SAM domain (Sterile alpha motif) 147 204 IPR001660 GO:0005515
Lele40g0936 207 ProSiteProfiles SAM domain profile. 147 201 IPR001660 GO:0005515
Lele40g0936 207 Gene3D - 149 207 IPR013761 -
Lele40g0936 207 SMART SAM_4 144 207 IPR001660 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0936 Lele-ChrLele40 19890030 19895061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0936 38 206 Glycosyltransferase AT3G07170 62.130 1.40e-65 198
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1117 37 20817648 20827182 Lele40g0936 40 19890030 19895061 hybridization
Lele38g0997 38 21492959 21498376 Lele40g0936 40 19890030 19895061 hybridization