Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g5362 . . . . . . . . . . . . . . . .
Pvu10g0200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0201 . . . Aed2g1477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu9g01124 . . Vra9g1071
Pvu10g0202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0203 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01655 . . . . . . . . . . . . . . . . . .
Pvu10g0204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01657 . . . . . . . . . . . . . . . . . .
Pvu10g0205 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0207 . . Adu02g01617 Aed2g1481 Aev02g1587 Ahy12g1652 Ahy2g1419 Aip02g01860 . . . Apr10g0383 Arst2g02090 Bach6g01190 . Bva02g01241 Car07g03189 Cca01g01264 . Dod07g1255 . . . . . . . . . . . . . . . . . . . . Mepo1g04408 . . Mtr8g0358 . Phco1g01659 . . . . . Seca4g10505 Spst4g01494 Ssu2g0552 . . Trre15g00413 . Vian9g01245 Vifa4g01465 Vimu9g01326 Viun10g00710 Vivi7g03835 Vra9g1073
Pvu10g0208 . . Adu02g01615 Aed2g1483 Aev02g1582 Ahy12g1649 Ahy2g1416 Aip02g01858 . . . Apr10g0382 Arst2g02089 . . Bva02g01240 Car07g03191 Cca01g01263 . Dod07g1247 . . . . . Gso3g0530 . . Lal19g0081 . Lan1g0884 . Lapu10g01029 . . . . . Lja3g4435 . Mepo1g04416 Mesa29g05091 . Mtr8g0352 . . . . . . . Seca4g10502 Spst4g01495 Ssu2g0553 . . Trre15g00408 Tsu08g00342 Vian9g01246 Vifa4g01470 Vimu9g01330 Viun10g00708 Vivi7g03837 Vra9g1074
   
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Select Species Gene Chromosome Start End Strand
Seca Seca4g10502 Chr4 240926047 240930537 +
Pvu Pvu10g0199 Chr10 2973565 2975079 +
Psa Psa7g5362 Chr7 463894390 463896170 -
Pvu Pvu10g0200 Chr10 2975492 2976464 -
Pvu Pvu10g0201 Chr10 2992708 2995944 -
Aed Aed2g1477 Chr2 17378635 17381690 -
Vimu Vimu9g01124 Chr9 18653904 18655093 +
Vra Vra9g1071 Chr9 13608229 13610798 -
Pvu Pvu10g0202 Chr10 3005012 3005326 +
Pvu Pvu10g0203 Chr10 3010756 3012270 +
Phco Phco1g01655 Chr1 54493701 54497202 +
Pvu Pvu10g0204 Chr10 3018910 3020424 +
Phco Phco1g01657 Chr1 54509156 54510331 +
Pvu Pvu10g0205 Chr10 3021216 3022259 -
Pvu Pvu10g0206 Chr10 3036982 3037621 -
Pvu Pvu10g0207 Chr10 3039068 3040025 +
Adu Adu02g01617 Chr02 68684601 68685808 -
Aed Aed2g1481 Chr2 17437007 17437843 +
Aev Aev02g1587 Chr02 17494500 17495285 -
Ahy Ahy12g1652 Chr12 89651926 89653524 -
Ahy Ahy2g1419 Chr2 75224100 75224918 -
Aip Aip02g01860 Chr02 81059986 81062348 -
Apr Apr10g0383 Chr10 9443524 9444629 -
Arst Arst2g02090 Chr2 68089210 68090791 -
Bach Bach6g01190 Chr6 10317309 10318355 +
Bva Bva02g01241 Chr02 16510857 16513011 -
Car Car07g03189 Chr07 59493237 59494339 -
Cca Cca01g01264 Chr01 22276742 22277771 -
Dod Dod07g1255 Chr07 33082768 33084298 -
Mepo Mepo1g04408 Chr1 51680245 51681249 -
Mtr Mtr8g0358 Chr8 4069994 4071209 +
Phco Phco1g01659 Chr1 54526631 54527428 +
Seca Seca4g10505 Chr4 240956858 240958415 +
Spst Spst4g01494 Chr4 53607368 53608180 +
Ssu Ssu2g0552 Chr2 31995071 31995883 +
Trre Trre15g00413 Chr15 2890144 2890851 +
Vian Vian9g01245 Chr9 26328067 26328879 +
Vifa Vifa4g01465 Chr4 432840649 432841341 -
Vimu Vimu9g01326 Chr9 21537122 21540676 +
Viun Viun10g00710 Chr10 7211117 7212437 -
Vivi Vivi7g03835 Chr7 104347448 104348412 -
Vra Vra9g1073 Chr9 13661487 13663251 +
Pvu Pvu10g0208 Chr10 3055848 3059397 -
Adu Adu02g01615 Chr02 68598008 68601568 +
Aed Aed2g1483 Chr2 17449159 17453920 -
Aev Aev02g1582 Chr02 17453151 17456638 +
Ahy Ahy12g1649 Chr12 89518472 89522269 +
Ahy Ahy2g1416 Chr2 75128741 75132534 +
Aip Aip02g01858 Chr02 80933944 80937449 +
Apr Apr10g0382 Chr10 9415479 9419330 +
Arst Arst2g02089 Chr2 68002479 68006285 +
Bva Bva02g01240 Chr02 16505443 16509142 +
Car Car07g03191 Chr07 59524401 59528946 -
Cca Cca01g01263 Chr01 22225405 22232415 +
Dod Dod07g1247 Chr07 32994254 32997500 +
Gso Gso3g0530 Chr3 11099183 11103767 -
Lal Lal19g0081 Chr19 628572 632010 -
Lan Lan1g0884 Chr1 19637199 19640498 +
Lapu Lapu10g01029 Chr10 12104247 12108183 +
Lja Lja3g4435 Chr3 85788455 85792138 +
Mepo Mepo1g04416 Chr1 51778887 51784171 -
Mesa Mesa29g05091 Chr29 83745510 83750189 -
Mtr Mtr8g0352 Chr8 4008198 4013515 +
Seca Seca4g10502 Chr4 240926047 240930537 +
Spst Spst4g01495 Chr4 53611300 53614742 -
Ssu Ssu2g0553 Chr2 32078726 32089358 -
Trre Trre15g00408 Chr15 2856100 2859277 +
Tsu Tsu08g00342 Chr08 3314111 3318546 +
Vian Vian9g01246 Chr9 26371453 26374592 -
Vifa Vifa4g01470 Chr4 433571515 433574964 -
Vimu Vimu9g01330 Chr9 21561740 21564563 -
Viun Viun10g00708 Chr10 7153640 7157447 +
Vivi Vivi7g03837 Chr7 104378518 104382257 -
Vra Vra9g1074 Chr9 13674753 13678768 -