Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g1024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1025 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1026 . . . . Adu04g02578 . . . . . . . . . . . . . . . Arst4g03407 . . . . . Bva13g03554 Bva04g03474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01464 . Lasa3g02067 . . . . . . . . . Lja1g3010 . . . Mepo3g02258 . Mesa25g01959 . . . . . Phac8g00780 . Phco3g02681 . . . . . Pste5g01184 . . . . . Pumo5g00153 . Pvu8g0548 . Rops8g00972 . Seca2g00858 . Spst1g01167 . . . . . . . Trre13g02361 . . . Vian2g00524 . Vifa5g01640 . Vimu6g00650 . Viun5g00757 . . . . .
Vvi4g1027 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva04g03475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01463 . Lasa3g02068 . . . . . . . . . Lja1g3008 . . . Mepo3g02259 . Mesa25g01958 . . . . . Phac8g00776 . Phco3g02682 . . . . . Pste5g01181 . . . . . Pumo5g00152 . Pvu8g0547 . Rops8g00971 . Seca2g00856 . Spst1g01168 . . . . . . . Trre13g02359 . . . Vian2g00523 . Vifa5g01642 . Vimu6g00651 . Viun5g00756 . . . . .
Vvi4g1028 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03555 Bva04g03476 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01462 . Lasa3g02069 . . . . . . . . . Lja1g3007 . . . Mepo3g02260 . Mesa25g01956 . . . . . . . Phco3g02683 . . . . . Pste5g01177 . . Pte8g00606 . . Pumo5g00151 . Pvu8g0545 . Rops8g00970 . Seca2g00854 . Spst1g01169 . . . . . . . Trre13g02358 . . . Vian2g00522 . Vifa5g01648 . Vimu6g00653 . Viun5g00755 . Vivi6g02988 . . .
Vvi4g1029 . . . . . . . . . . . Ahy17g2458 . Aip07g02624 . . . Amo17g2328 . . . . . . . . . . . . . . . . . . . . . . . . . Gma16g01332 . . . . Lal16g1612 . . . . . . . . . . . Lapu1g01461 . Lasa3g02072 . . . . . . . . . Lja1g3006 . . . . . Mesa25g01955 . . . . . . . Phco3g02684 . . . . . Pste5g01173 . . . . . Pumo5g00150 . Pvu8g0544 . Rops8g00969 . . . Spst1g01170 . . . . . . . . . . . Vian2g00521 . Vifa5g01650 . Vimu6g00654 . Viun5g00754 . . . . .
Vvi4g1030 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01460 . Lasa3g02073 . . . . . . . . . Lja1g3005 . . . Mepo3g02262 . Mesa25g01953 . . . . . Phac8g00772 . Phco3g02685 . . . . . Pste5g01169 . . . . . Pumo5g00149 . Pvu8g0543 . Rops8g00968 . Seca2g00851 . Spst1g01172 . . . . . . . Trre13g02356 . . . Vian2g00520 . Vifa5g01651 . Vimu6g00655 . Viun5g00753 . Vivi6g02994 . . .
Vvi4g1031 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03557 Bva04g03477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01459 . Lasa3g02074 . . . . . . . . . Lja1g3004 Lja5g1655 . Mal1g1244 Mepo3g02263 . . . . . . Mtr1g2771 Phac8g00770 . Phco3g02686 . . . . . Pste5g01168 . . Pte4g00952 . . Pumo5g00148 . Pvu8g0542 . Rops8g00967 . Seca2g00850 . Spst1g01173 . . . . Sto11g1603 . Tpr1g1640 . . . Tsu01g03245 Vian2g00519 . Vifa5g01652 . Vimu6g00656 . Viun5g00752 . . . . .
Vvi4g1032 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva04g03478 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01458 . Lasa3g02075 . . . . . . . . . Lja1g3003 . . . Mepo3g02264 . Mesa25g01951 . . . . . . . Phco3g02687 . . . . . Pste5g01167 . . Pte8g00608 . . Pumo5g00147 . Pvu8g0541 . Rops8g00964 . Seca2g00849 . Spst1g01174 . . . . . . . Trre13g02352 . . . Vian2g00518 . Vifa5g01653 . Vimu6g00658 . Viun5g00751 . Vivi6g02996 . . .
Vvi4g1033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 515 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g1024 Chr4 16897686 16897919 +
Vvi Vvi4g1025 Chr4 16950538 16953530 -
Vvi Vvi4g1026 Chr4 16985685 16993329 +
Adu Adu04g02578 Chr04 112058635 112062468 -
Arst Arst4g03407 Chr4 112038144 112041895 -
Bva Bva13g03554 Chr13 24010378 24015352 +
Bva Bva04g03474 Chr04 27495192 27500660 +
Lapu Lapu1g01464 Chr1 27472916 27477693 -
Lasa Lasa3g02067 Chr3 522689832 522694105 +
Lja Lja1g3010 Chr1 36486066 36491630 -
Mepo Mepo3g02258 Chr3 32300732 32305430 +
Mesa Mesa25g01959 Chr25 24183717 24188537 -
Phac Phac8g00780 Chr8 5095772 5100611 -
Phco Phco3g02681 Chr3 53332734 53341028 +
Pste Pste5g01184 Chr5 7647315 7652589 -
Pumo Pumo5g00153 Chr5 4452289 4456747 -
Pvu Pvu8g0548 Chr8 4796201 4800918 -
Rops Rops8g00972 Chr8 20803416 20808535 -
Seca Seca2g00858 Chr2 13135122 13140372 -
Spst Spst1g01167 Chr1 14018714 14022873 +
Trre Trre13g02361 Chr13 21326296 21330153 -
Vian Vian2g00524 Chr2 6342508 6346653 -
Vifa Vifa5g01640 Chr5 482365584 482369624 +
Vimu Vimu6g00650 Chr6 7637453 7641573 +
Viun Viun5g00757 Chr5 4744556 4749106 -
Vvi Vvi4g1027 Chr4 16994789 17002032 +
Bva Bva04g03475 Chr04 27501235 27505106 +
Lapu Lapu1g01463 Chr1 27467954 27472408 -
Lasa Lasa3g02068 Chr3 522731154 522734985 +
Lja Lja1g3008 Chr1 36469689 36475026 -
Mepo Mepo3g02259 Chr3 32306731 32310987 +
Mesa Mesa25g01958 Chr25 24178122 24181791 -
Phac Phac8g00776 Chr8 5090960 5095422 -
Phco Phco3g02682 Chr3 53342457 53346381 +
Pste Pste5g01181 Chr5 7640676 7642565 -
Pumo Pumo5g00152 Chr5 4439341 4451434 -
Pvu Pvu8g0547 Chr8 4791246 4795442 -
Rops Rops8g00971 Chr8 20793786 20799086 -
Seca Seca2g00856 Chr2 13123020 13128503 -
Spst Spst1g01168 Chr1 14024986 14029373 +
Trre Trre13g02359 Chr13 21316049 21320918 -
Vian Vian2g00523 Chr2 6337442 6341314 -
Vifa Vifa5g01642 Chr5 483333923 483340255 +
Vimu Vimu6g00651 Chr6 7643327 7647340 +
Viun Viun5g00756 Chr5 4739376 4743356 -
Vvi Vvi4g1028 Chr4 17022569 17026360 +
Bva Bva13g03555 Chr13 24017245 24020971 +
Bva Bva04g03476 Chr04 27505884 27510374 +
Lapu Lapu1g01462 Chr1 27441124 27445997 -
Lasa Lasa3g02069 Chr3 522949430 522952646 -
Lja Lja1g3007 Chr1 36454776 36459376 -
Mepo Mepo3g02260 Chr3 32321944 32326188 +
Mesa Mesa25g01956 Chr25 24163463 24166636 -
Phco Phco3g02683 Chr3 53359467 53362806 +
Pste Pste5g01177 Chr5 7615556 7627986 -
Pte Pte8g00606 Chr8 28603167 28606943 +
Pumo Pumo5g00151 Chr5 4416310 4421187 -
Pvu Pvu8g0545 Chr8 4772773 4776420 -
Rops Rops8g00970 Chr8 20778435 20782851 -
Seca Seca2g00854 Chr2 13086713 13091178 -
Spst Spst1g01169 Chr1 14038259 14041654 +
Trre Trre13g02358 Chr13 21306217 21309200 -
Vian Vian2g00522 Chr2 6293150 6296292 -
Vifa Vifa5g01648 Chr5 486692365 486695565 +
Vimu Vimu6g00653 Chr6 7678517 7681658 +
Viun Viun5g00755 Chr5 4723636 4727798 -
Vivi Vivi6g02988 Chr6 117287133 117291493 +
Vvi Vvi4g1029 Chr4 17038120 17060712 -
Ahy Ahy17g2458 Chr17 117102681 117104736 -
Aip Aip07g02624 Chr07 108684458 108686470 -
Amo Amo17g2328 Chr17 117861749 117863760 -
Gma Gma16g01332 Chr16 32235492 32241450 +
Lal Lal16g1612 Chr16 14455852 14460358 +
Lapu Lapu1g01461 Chr1 27432216 27438072 +
Lasa Lasa3g02072 Chr3 523120616 523124179 -
Lja Lja1g3006 Chr1 36447515 36453813 +
Mesa Mesa25g01955 Chr25 24156046 24160194 +
Phco Phco3g02684 Chr3 53366868 53371879 -
Pste Pste5g01173 Chr5 7605105 7608420 +
Pumo Pumo5g00150 Chr5 4404691 4413766 +
Pvu Pvu8g0544 Chr8 4762888 4768384 +
Rops Rops8g00969 Chr8 20771113 20776034 +
Spst Spst1g01170 Chr1 14043695 14048186 -
Vian Vian2g00521 Chr2 6284740 6289378 +
Vifa Vifa5g01650 Chr5 487209254 487212952 -
Vimu Vimu6g00654 Chr6 7685723 7689963 -
Viun Viun5g00754 Chr5 4716214 4721433 +
Vvi Vvi4g1030 Chr4 17091887 17094478 +
Bva Bva13g03556 Chr13 24022300 24024395 +
Lapu Lapu1g01460 Chr1 27415798 27418420 -
Lasa Lasa3g02073 Chr3 523188648 523192809 +
Lja Lja1g3005 Chr1 36436889 36440834 -
Mepo Mepo3g02262 Chr3 32348915 32352030 +
Mesa Mesa25g01953 Chr25 24128668 24131543 -
Phac Phac8g00772 Chr8 5049203 5052511 -
Phco Phco3g02685 Chr3 53380663 53383653 +
Pste Pste5g01169 Chr5 7581343 7584736 -
Pumo Pumo5g00149 Chr5 4383834 4387307 -
Pvu Pvu8g0543 Chr8 4749871 4752944 -
Rops Rops8g00968 Chr8 20743532 20747340 -
Seca Seca2g00851 Chr2 12984889 12987824 -
Spst Spst1g01172 Chr1 14053076 14056678 +
Trre Trre13g02356 Chr13 21282845 21285926 -
Vian Vian2g00520 Chr2 6271755 6274450 -
Vifa Vifa5g01651 Chr5 487386778 487392132 +
Vimu Vimu6g00655 Chr6 7704216 7706319 +
Viun Viun5g00753 Chr5 4700160 4702999 -
Vivi Vivi6g02994 Chr6 117318183 117324483 +
Vvi Vvi4g1031 Chr4 17097036 17107556 -
Bva Bva13g03557 Chr13 24024514 24034180 -
Bva Bva04g03477 Chr04 27510931 27514412 -
Lapu Lapu1g01459 Chr1 27408477 27413323 +
Lasa Lasa3g02074 Chr3 523193155 523196307 -
Lja Lja1g3004 Chr1 36430631 36436292 +
Lja Lja5g1655 Chr5 17961469 17967565 -
Mal Mal1g1244 Chr1 15735320 15743106 +
Mepo Mepo3g02263 Chr3 32352996 32356517 -
Mtr Mtr1g2771 Chr1 38892382 38903175 +
Phac Phac8g00770 Chr8 5041468 5046823 +
Phco Phco3g02686 Chr3 53386009 53390848 -
Pste Pste5g01168 Chr5 7573851 7580122 +
Pte Pte4g00952 Chr4 40630773 40632749 -
Pumo Pumo5g00148 Chr5 4377749 4383081 +
Pvu Pvu8g0542 Chr8 4743377 4748136 +
Rops Rops8g00967 Chr8 20736456 20742455 +
Seca Seca2g00850 Chr2 12976168 12981555 +
Spst Spst1g01173 Chr1 14057784 14062746 -
Sto Sto11g1603 Chr11 15080815 15082074 +
Tpr Tpr1g1640 Chr1 15511146 15517306 -
Tsu Tsu01g03245 Chr01 40235653 40242539 +
Vian Vian2g00519 Chr2 6265426 6270082 +
Vifa Vifa5g01652 Chr5 487392470 487395918 -
Vimu Vimu6g00656 Chr6 7707981 7712641 -
Viun Viun5g00752 Chr5 4694062 4699032 +
Vvi Vvi4g1032 Chr4 17127847 17132102 +
Bva Bva04g03478 Chr04 27515136 27516861 +
Lapu Lapu1g01458 Chr1 27398214 27401853 -
Lasa Lasa3g02075 Chr3 523455296 523458428 +
Lja Lja1g3003 Chr1 36414863 36418254 -
Mepo Mepo3g02264 Chr3 32361132 32364443 +
Mesa Mesa25g01951 Chr25 24117320 24120132 -
Phco Phco3g02687 Chr3 53395226 53398249 +
Pste Pste5g01167 Chr5 7566780 7570289 -
Pte Pte8g00608 Chr8 28629678 28633212 +
Pumo Pumo5g00147 Chr5 4369702 4374140 -
Pvu Pvu8g0541 Chr8 4735189 4737902 -
Rops Rops8g00964 Chr8 20712611 20715409 -
Seca Seca2g00849 Chr2 12941513 12944846 -
Spst Spst1g01174 Chr1 14065687 14067922 +
Trre Trre13g02352 Chr13 21269058 21272787 -
Vian Vian2g00518 Chr2 6251542 6254184 -
Vifa Vifa5g01653 Chr5 487652930 487654016 +
Vimu Vimu6g00658 Chr6 7723980 7726430 +
Viun Viun5g00751 Chr5 4682956 4685799 -
Vivi Vivi6g02996 Chr6 117334070 117336502 +
Vvi Vvi4g1033 Chr4 17133084 17134997 +
Ahy Ahy17g2458 Chr17 117102681 117104736 -
Aip Aip07g02624 Chr07 108684458 108686470 -
Amo Amo17g2328 Chr17 117861749 117863760 -