Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1603 ATGGCAACAGATCATAATTCTCTATACGAAGCCTCCTCGTCTCCTCTCTCAAAATCTCCATGGTCCTCTCACATGGACACGCATCACAATTCCTCCACCACATCGGAAGACAACTCCTGCAGCGTTCTGGTGGGCTCACTGATCCGCGAAGAAGGCCACATATACTCGCTCGCGGCATCCAAGGATTTACTCTACACAGGATCCGACAGCAAGAACATTCGGGTTTGGAAGAACCAGAAGGAGTTTTCAGGCTTCAAATCCAATAGTGGTTTGATTAAAGCAATTGTGATAGCCGGAGAGAAAATCCTGACGGGTCATCAAGACGGCAAAATTAGGGTTTGGAAAGTATCTCCTAAAGACGAAGCCCAATACAAGCGCATAGCAACGTTGCCGACTCTAAGAAACTACATAAAATGTTCAATGAAGCCCAGCTATTACGTGGAAGGTCAAGGCAGGCGAAATCGTAGCCAACTCTGGATCAAGCACTACGACGCGATCTCGTGCCTCGGAATGACGGAAGATCACTCCCTTATATACTCTGCTTCGTGGGACAAAACGTTCAAAGTGTGGCGAGCGGAGAATTACAAATGCTTGGAGTCCGTAACGGCGCATGACGACGCCGTTAACGCGATGGTGTTGGGATTTGACGGGTTGGTGTTCACGGGGTCAGCAGATGGCAGCGTTAAGGTTTGGCGGAGGGAGTTACAAGGGAAAGGGACGAAGCATTTCTTTTCGCAGGTGTTGTTGAAGCAAGAGTGTGCTGTAACGGCGTTAGCGATTAACCCGGAAGGGACTGTGTTGTACTGCGGGTCTTCTGACGGGTTGGTTAACTTTTGGGAATGGGAAACGACGCTATCACACGGCGGCGTTTTGAGGGGGCataagttagcggttctgtgtTTGGCCACGGCGCATAATCTTGTGTTCAGTGGGTCAGCTGATATGTCTATATGTGTGTGGAAAAGAGCACTGAATGGGGAGCATCATTGCTTGTCGGTTCTGAATAGTCACACCGGTCCGGTGAAGTGTCTGGCGGTGGAGAAAGATGTGGACGCTATGTGTGGTGAGCGAAGGTGGATGTTGTACAGTGGGAGTTTGGACAAGTCGGTGAAGATGTGGAGGGTGTCGCAGCCTCagcatcaccatcatcatcagtcGCAGCGTAATAGCACAGACGCTAGTTACCCGCGAGTCATGTCCATGCGAAAAATGGGGTCAaaaagatattaa 1230 0.4813 MATDHNSLYEASSSPLSKSPWSSHMDTHHNSSTTSEDNSCSVLVGSLIREEGHIYSLAASKDLLYTGSDSKNIRVWKNQKEFSGFKSNSGLIKAIVIAGEKILTGHQDGKIRVWKVSPKDEAQYKRIATLPTLRNYIKCSMKPSYYVEGQGRRNRSQLWIKHYDAISCLGMTEDHSLIYSASWDKTFKVWRAENYKCLESVTAHDDAVNAMVLGFDGLVFTGSADGSVKVWRRELQGKGTKHFFSQVLLKQECAVTALAINPEGTVLYCGSSDGLVNFWEWETTLSHGGVLRGHKLAVLCLATAHNLVFSGSADMSICVWKRALNGEHHCLSVLNSHTGPVKCLAVEKDVDAMCGERRWMLYSGSLDKSVKMWRVSQPQHHHHHQSQRNSTDASYPRVMSMRKMGSKRY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1603 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 280 - -
Sto11g1603 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 321 IPR001680 GO:0005515
Sto11g1603 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 231 - -
Sto11g1603 409 Gene3D - 149 241 IPR015943 GO:0005515
Sto11g1603 409 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 394 IPR045182 -
Sto11g1603 409 SUPERFAMILY WD40 repeat-like 51 385 IPR036322 GO:0005515
Sto11g1603 409 MobiDBLite consensus disorder prediction 1 38 - -
Sto11g1603 409 CDD WD40 51 374 - -
Sto11g1603 409 Pfam WD domain, G-beta repeat 51 77 IPR001680 GO:0005515
Sto11g1603 409 Pfam WD domain, G-beta repeat 250 279 IPR001680 GO:0005515
Sto11g1603 409 Pfam WD domain, G-beta repeat 162 190 IPR001680 GO:0005515
Sto11g1603 409 Pfam WD domain, G-beta repeat 330 373 IPR001680 GO:0005515
Sto11g1603 409 Pfam WD domain, G-beta repeat 289 321 IPR001680 GO:0005515
Sto11g1603 409 Pfam WD domain, G-beta repeat 196 231 IPR001680 GO:0005515
Sto11g1603 409 MobiDBLite consensus disorder prediction 375 397 - -
Sto11g1603 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 231 IPR001680 GO:0005515
Sto11g1603 409 PRINTS G protein beta WD-40 repeat signature 102 116 IPR020472 -
Sto11g1603 409 PRINTS G protein beta WD-40 repeat signature 219 233 IPR020472 -
Sto11g1603 409 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Sto11g1603 409 Gene3D - 242 395 IPR015943 GO:0005515
Sto11g1603 409 SMART WD40_4 153 191 IPR001680 GO:0005515
Sto11g1603 409 SMART WD40_4 327 374 IPR001680 GO:0005515
Sto11g1603 409 SMART WD40_4 241 280 IPR001680 GO:0005515
Sto11g1603 409 SMART WD40_4 78 115 IPR001680 GO:0005515
Sto11g1603 409 SMART WD40_4 40 77 IPR001680 GO:0005515
Sto11g1603 409 SMART WD40_4 194 232 IPR001680 GO:0005515
Sto11g1603 409 SMART WD40_4 284 321 IPR001680 GO:0005515
Sto11g1603 409 PANTHER BNAANNG11810D PROTEIN 9 394 - -
Sto11g1603 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 200 IPR001680 GO:0005515
Sto11g1603 409 Gene3D - 26 142 IPR015943 GO:0005515
Sto11g1603 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 280 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1603 Sto-Chr11 15080815 15082074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1603 195 374 Acyl Lipid Metabolism Gene Families AT3G18860 28.042 3.72e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1603 - - gmx:100819990 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1603 11 15080815 15082074 Sto11g1603 11 15080815 15082074 ECH