Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2771 ATGATGGATCTGAGATATTTATTATTGATTATACTAGCTTTGGAAATTTTGTGTGTTGCGAATGGCGATAATTTGGTGTTTCAGGTGGAGCGTCGGAAAACGACTTTAAGTGGAATTAAACATCACGATCATCATCGTCGTGGTAGATTTCTTTCATCCGTTGATTTCAATCTTGGTGGTAATGGTCTTCCTACTAGAACCGGGTTGTATTTCACTAAACTTGGGCTTGGCTCTCCAAAGAAGGACTACTATGTCCAAGTTGATACAGGAAGTGATATTCTGTGGGTGAATTGTGTTGAGTGCTCAAGATGTCCTACGAAAAGCCAAATTGGTATGGACTTGACTCTCTATGACCCAAAGGGATCTCATACTTCAGAGTTAATTTCTTGTGATCATGAGTTTTGCTCTTCCACATATGATGGTCCGATTCCTGGTTGTAAGGCGGAAACACCCTGCCCCTATAGCATAACTTATGGAGATGGAAGTGCAACTACTGGATACTATGTCAGGGACTATCTTACTTTTGACCGGATCAACGGAAATCTCCATACCGCACCGCAAAATAGCAGCATCATTTTTGGGTGTGGCGCTGTACAATCTGGCACATTGGGTGCATCTTCCGAAGAAGCCCTTGATGGAATAATTGGTTTTGGACAGGAAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCTCGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAATTGGTGGAACCAAAAGTCAGAACAACTCCATTGGTACCAAATATGGCACATTACAATGTGGTTTTGAAGAATATTGAAGTTGATGGTGATGTTCTACAGCTTCCCTCGGATATATTTGATTCTGGAAATGGGAAGGGGACAGTGATTGATAGTGGAACAACCTTGGCTTATCTTCCTGTCATAGTTTATGACCAACTAATTCCAAAGATTTTTGCCCGTCAGCCTGAATTGAAATTAGCTCGCATTGAGGAACAATTTAAATGTTTTCCGTATGCTGGAAATGTTGATGGTGGATTTCCAGTTGTCAAACTACATTTTGAGGGTTCTCTTTCTCTGACAGTTTATCCTCATGACTATCTGTTCCAATATAAGGTGGCTGGTGTCCGATGTATTGGCTGGCAGAAAAGTGTGACCCAAACTAAGGATGGAAAGGACATGACACTTCTTGGAGATTTGGTGCTTTCAAACAAACTTGTCTTGTACGATCTTGAGAATATGGCTATTGGATGGACTGAATACAATTGCTCTTCCAGCATTAAAGTGAAGGATGCAACGACTGGAATAGTACATACAGTGGGTGCACACAATATTTCTTCAGCTTCTACCTTTTTAATTGGTAGAATATTGTCATTCTTTTTGTTGCTAATTGCCATGTTAAACTGTTTTTATAACTAG 1440 0.4028 MMDLRYLLLIILALEILCVANGDNLVFQVERRKTTLSGIKHHDHHRRGRFLSSVDFNLGGNGLPTRTGLYFTKLGLGSPKKDYYVQVDTGSDILWVNCVECSRCPTKSQIGMDLTLYDPKGSHTSELISCDHEFCSSTYDGPIPGCKAETPCPYSITYGDGSATTGYYVRDYLTFDRINGNLHTAPQNSSIIFGCGAVQSGTLGASSEEALDGIIGFGQENSSVLSQLAASRKVKKIFSHCLDNIRGGGIFAIGELVEPKVRTTPLVPNMAHYNVVLKNIEVDGDVLQLPSDIFDSGNGKGTVIDSGTTLAYLPVIVYDQLIPKIFARQPELKLARIEEQFKCFPYAGNVDGGFPVVKLHFEGSLSLTVYPHDYLFQYKVAGVRCIGWQKSVTQTKDGKDMTLLGDLVLSNKLVLYDLENMAIGWTEYNCSSSIKVKDATTGIVHTVGAHNISSASTFLIGRILSFFLLLIAMLNCFYN* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2771 479 PRINTS Pepsin (A1) aspartic protease family signature 76 96 IPR001461 GO:0004190|GO:0006508
Mtr1g2771 479 PRINTS Pepsin (A1) aspartic protease family signature 302 313 IPR001461 GO:0004190|GO:0006508
Mtr1g2771 479 PRINTS Pepsin (A1) aspartic protease family signature 402 417 IPR001461 GO:0004190|GO:0006508
Mtr1g2771 479 Gene3D Acid Proteases 256 436 IPR021109 -
Mtr1g2771 479 ProSiteProfiles Peptidase family A1 domain profile. 70 426 IPR033121 -
Mtr1g2771 479 Gene3D Acid Proteases 61 255 IPR021109 -
Mtr1g2771 479 Pfam Xylanase inhibitor C-terminal 272 426 IPR032799 -
Mtr1g2771 479 Pfam Xylanase inhibitor N-terminal 70 254 IPR032861 -
Mtr1g2771 479 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 447 - -
Mtr1g2771 479 PANTHER ASPARTYL PROTEASES 10 447 IPR001461 GO:0004190|GO:0006508
Mtr1g2771 479 CDD pepsin_A_like_plant 70 430 IPR034161 -
Mtr1g2771 479 SUPERFAMILY Acid proteases 64 434 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2771 Mtr-Chr1 38892382 38903175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2771 52 431 Miscellaneous Gene Families AT1G44130 26.700 2.59e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2771 - - gmx:100804123 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2771 1 38892382 38903175 Mtr1g2771 1 38892382 38903175 ECH