Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00850 ATGGATTGTAGAAAAGGATTGTTTTTTGTTGTTGTGGTTGTGGGGTTGCTTGTTCCTCAAATCTGTTGCCTTGCCAATGCAAATTTGGTGCTCCCTGTTGAACGCAAATTCAAAGGCCCTGTTGAAAATCTAGGTGCAATCAAAGCTCATGATGCTCATCGCCGTGGTAGATTTCTCTCTGCTGTTGATGTCCCTCTTGGTGGCAATGGAATCCCTTCTTCAACTGGGTTGTATTATACCAAAATTGGGCTTGGCTCTCCTGCAAAGGACTACTATGTGCAGGTTGACACAGGAAGTGACATTCTATGGGTGAATTGTATTGGCTGCACATCATGTCCCAGGAAAAGTGGTCTTGGTATGGATTTGATCCTCTATGACCCAAATGAGTCCAAAACTTCAAGTGTGGTCCCTTGTGATGGTGATTTTTGCACTTCCTCATATAGTGGTCCGATTGATGGTTGCAAGAAAGACATGGCCTGCCCATACAGCATAACTTATGGAGATGGAAGTACAACTGCCGGGTCGTATGTGAAGGATTATCTTACATTTAACGAAGTTAATGGTAGTCTCCAGACTGCACCAGAAAACAGCAATGTGATTTTTGGGTGTGGCTCTAAACAATCTGGGACATTGAGTTCAGCTTCTCAAGAAGCCCTTGATGGAATAATTGGTTTTGGACAATCAAATTCTTCTGTGCTTTCACAACTTGCTGCAGATGGAAAGGTGAAGAAAATATTTTCGCACTGCCTTGACAATATTAATGGAGGAGGGATATTTTCCATAGGGGAAGTGGTGGAGCCAAAATTTAATACAACTCCATTGGTACCAAGAATGGCACACTACAATGTGGTTTTGAAGGACATGGAGGTTGATGGAGAGCCTATCCAGCTCCCCTGGGATATATTTGGTACTGGAAATGGGAGGGGAACAATTATAGATAGTGGTACAACCTTGGCTTATCTTCCAGCCTCGGTTTATGACCAGCTAGTGCCAAAGGTTTTGTCCAAGCAGCCTGGACTGAAATTGTATCTTGTTGAGGAACAGTTTACTTGTTTTCATTATAATGACAACCTTGATGAAGGATTTCCAGAAATCAAGTTTCACTTCGAGGGGCTTTCTTTGACAGTTTATCCTCATGACTACCTGTTCCTGTTTAAAAACGACATGTATTGTATTGGCTGGATGAAAAGTACAGCACAAACTAAGGATGGACAGGACCTGATTCTTCTTGGAGATTTGGTGCTGTCAAACAAATTAGTCACATATGATCTTGAAAATATGAATATTGGATGGATTGACTACAATTGTGAGTACCCCACTTGTTTATATGCTAAATGTTACAGTCCAAGATTGTTCCAATCATATCACCTGGGATTGTTTCTGTTAGTATTCTTTAATGAGAATCATGTTTCATCCTTCTCTAGCCCATCTCTGTCCCTGCTTTTGATGTCTCTATCCCTCCACAATCCACACTTTATTTTCATGTCTCTTGCAAATGCTTTTGAGACTCATGAATTAGAAAAGGAAAGGTCAACTAATCTATAA 1545 0.4104 MDCRKGLFFVVVVVGLLVPQICCLANANLVLPVERKFKGPVENLGAIKAHDAHRRGRFLSAVDVPLGGNGIPSSTGLYYTKIGLGSPAKDYYVQVDTGSDILWVNCIGCTSCPRKSGLGMDLILYDPNESKTSSVVPCDGDFCTSSYSGPIDGCKKDMACPYSITYGDGSTTAGSYVKDYLTFNEVNGSLQTAPENSNVIFGCGSKQSGTLSSASQEALDGIIGFGQSNSSVLSQLAADGKVKKIFSHCLDNINGGGIFSIGEVVEPKFNTTPLVPRMAHYNVVLKDMEVDGEPIQLPWDIFGTGNGRGTIIDSGTTLAYLPASVYDQLVPKVLSKQPGLKLYLVEEQFTCFHYNDNLDEGFPEIKFHFEGLSLTVYPHDYLFLFKNDMYCIGWMKSTAQTKDGQDLILLGDLVLSNKLVTYDLENMNIGWIDYNCEYPTCLYAKCYSPRLFQSYHLGLFLLVFFNENHVSSFSSPSLSLLLMSLSLHNPHFIFMSLANAFETHELEKERSTNL. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00850 514 Gene3D Acid Proteases 61 263 IPR021109 -
Seca2g00850 514 Pfam Xylanase inhibitor N-terminal 78 262 IPR032861 -
Seca2g00850 514 Gene3D Acid Proteases 264 440 IPR021109 -
Seca2g00850 514 FunFam Eukaryotic aspartyl protease family protein 68 262 - -
Seca2g00850 514 PANTHER ASPARTYL PROTEASES 43 436 IPR001461 GO:0004190|GO:0006508
Seca2g00850 514 CDD pepsin_A_like_plant 78 436 IPR034161 -
Seca2g00850 514 Pfam Xylanase inhibitor C-terminal 280 430 IPR032799 -
Seca2g00850 514 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Seca2g00850 514 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Seca2g00850 514 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Seca2g00850 514 SUPERFAMILY Acid proteases 72 436 IPR021109 -
Seca2g00850 514 ProSiteProfiles Peptidase family A1 domain profile. 78 432 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00850 Seca-Chr2 12976168 12981555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00850 60 437 Miscellaneous Gene Families AT1G44130 26.633 7.46e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00850 - - gmx:100779846 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00850 2 12976168 12981555 Seca2g00850 2 12976168 12981555 ECH