Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01652 ATGGATCGTGTAAGAGGGTTTCTTCTTGTTATTTTCACGTTGTTTCTTCTTGTTGTTGATGCTTCTGATTTGGTTTTCCCTGTTGAGCGTAAATTCAAAGGGCCTCATCAGAGTTTAGATGCAATCAAAACTCATGATGCTAATAGACGTGGTAGATTTCTGTCTGCTGTTGAAATTCCTCTCGGTGGCAATGGTCTTCCTTCTTCAACTGGGCTATATTACACCAAACTAGGGCTTGGTTCTCCTGCTAAGGACTTCTATGTACAAGTTGACACAGGAAGTGACATTCTTTGGGTGAATTGTGTAGGCTGCACAGCATGTCCCAAGAAGAGTGGTCTTGGTATGGATTTAACCCTCTATAACCCAAAAGCCTCCATAACTGCAAGTGTGGTACCTTGCGATGATGAATTTTGCACTTCCGCATATGATGGTCCAATTTCTGGATGCAAGAAAGAGATGTCATGTCCGTACGGCATAACTTATGGAGATGGAAGTACAACCTCTGGTTCCTATGTGAAGGATGCTCTTACATTCGACCGAATAAGTGGTAATCTCAACACCACACCAGATAATAGCAGTGTGATTTTCGGGTGTGGCGCAAAACAATCCGGGACATTGAGTTCATCTTCTGATGAAGCCCTTGATGGTATAATTGGTTTTGGACAATCAAATTCTTCTGTACTTTCACAGCTTGCTGCATCGGGAAAGGTGAAAAGGATATTTTCGCACTGCCTTGATAGTATCAACGGAGGAGGAATATTTTCCATAGGAGAAGTGATGGAGCCAAAGTATAACACTACTCCATTGGTACCAAGAATGGCACATTACAATGTGATCTTGAAGGACATGGAGGTTGATGGGGATCCTATACAGCTCCCTACAGATATATTTGATTCTGGAAGTGGAAGAGGAACAATTATAGACAGTGGTACCACCTTGGCTTATCTTCCAGCTTCAGTTTACAACCAGATAGTAACGAAGATTTTGGCTCGGCAACCGGGACTAAAATTGTATCTTGTTGAGGACCAGTTTACTTGTTTTCATTTTTCTAAGAATTTTGATGAAGGATTTCCACTTGTCAAGTTTTTCTTTGAGGGTCTTACTCTTACAGTTTTTCCTCATGACTACTTGTTCTTTTATAAAAACGATGTTCATTGTATTGGCTGGCAGAAAAGTAACACACAGACTAAGGATGGAAAAGAGCTGATTCTTCTTGGAGATTTGGTGCTGTCAAACAAATTAGTTGTATATGATCTTGATAACATGACAATTGGATGGACTGATTTCAATTGTTCCTCCAGCATTAAAATAAAGGATGATAATGAGAGTGGATCTGTATATACAGTTGGTGCAAAAGATCTTTCTTCGGCTACCACTGTGTTAACTGGAAGAATATTGTCATTCTTATTGTTGATTATTGCCCTGCTAAGCACTTAA 1437 0.4008 MDRVRGFLLVIFTLFLLVVDASDLVFPVERKFKGPHQSLDAIKTHDANRRGRFLSAVEIPLGGNGLPSSTGLYYTKLGLGSPAKDFYVQVDTGSDILWVNCVGCTACPKKSGLGMDLTLYNPKASITASVVPCDDEFCTSAYDGPISGCKKEMSCPYGITYGDGSTTSGSYVKDALTFDRISGNLNTTPDNSSVIFGCGAKQSGTLSSSSDEALDGIIGFGQSNSSVLSQLAASGKVKRIFSHCLDSINGGGIFSIGEVMEPKYNTTPLVPRMAHYNVILKDMEVDGDPIQLPTDIFDSGSGRGTIIDSGTTLAYLPASVYNQIVTKILARQPGLKLYLVEDQFTCFHFSKNFDEGFPLVKFFFEGLTLTVFPHDYLFFYKNDVHCIGWQKSNTQTKDGKELILLGDLVLSNKLVVYDLDNMTIGWTDFNCSSSIKIKDDNESGSVYTVGAKDLSSATTVLTGRILSFLLLIIALLST 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01652 478 CDD pepsin_A_like_plant 73 431 IPR034161 -
Vifa5g01652 478 Gene3D Acid Proteases 259 437 IPR021109 -
Vifa5g01652 478 PRINTS Pepsin (A1) aspartic protease family signature 305 316 IPR001461 GO:0004190|GO:0006508
Vifa5g01652 478 PRINTS Pepsin (A1) aspartic protease family signature 403 418 IPR001461 GO:0004190|GO:0006508
Vifa5g01652 478 PRINTS Pepsin (A1) aspartic protease family signature 79 99 IPR001461 GO:0004190|GO:0006508
Vifa5g01652 478 Pfam Xylanase inhibitor N-terminal 73 257 IPR032861 -
Vifa5g01652 478 ProSiteProfiles Peptidase family A1 domain profile. 73 427 IPR033121 -
Vifa5g01652 478 SUPERFAMILY Acid proteases 67 435 IPR021109 -
Vifa5g01652 478 Pfam Xylanase inhibitor C-terminal 275 427 IPR032799 -
Vifa5g01652 478 Gene3D Acid Proteases 55 258 IPR021109 -
Vifa5g01652 478 PANTHER ASPARTYL PROTEASES 10 425 IPR001461 GO:0004190|GO:0006508
Vifa5g01652 478 FunFam Eukaryotic aspartyl protease family protein 63 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01652 Vifa-Chr5 487392470 487395918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01652 55 432 Miscellaneous Gene Families AT1G44130 27.778 3.67e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01652 - - gmx:100779846 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01652 5 487392470 487395918 Vifa5g01652 5 487392470 487395918 ECH