Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01642 ATGGAACCTGGCGACTGTGACGGGGACAACACTGCTGTATCTGCTCTGCTTCAGGGTGGTGTCCAAAGGGTTGTCATTGGAATGAGACACCCTTTGCAACATTTTAGAGGCAATGCTGTTCGTGCACTCAGAAGTCAAGGATTGCAGGTTGATCTTCTCGGAGAGGATCTCACCAGTAAGCTCATAGAGGATGCTCAGAAAGAATGTCTTCTTGTTAATGCTCCTTTGATTTGTAGAGCTCATTCGCGTGTTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGGTAAAATTGCTGCTAGTACTGGTCATGCATGGTGGATAAGCAGCAAGAAATCTAGAAAACTAGTTTTTGAGTTGCGAGCTAGAAGCGATGCAATAATAGTTGGAGGAAATACAGTTCGCAGGGACAATCCAAGAATGACAGCGAGACATGGAGTTTTTTGGGAGTGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCATTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCTCCTGTCGGTGATCTTGGGATGGTTGAGATGTCACAGGCTATAAATCTAGTTGATGTTTGCTATGAGCAGATTGGGCCTGACATGCTTGTTAGCGGATTTCTTCAACCGATACCAGACACGGCACCGACAATCCCATCACCAGAAAAAACTTTTGTTGTTGACCCTACTGTCTCACGTTATGAATCCGGCATCATATTTTTCTACAAAACATGGGATCCTTATGGTGCATTGTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGACGAAAATGGCGATAGTGTGACTTGGTTGAGTGTGCAACATTACTACCAGGCGCACAAGTTTGTTGGAGTGGATGATACTGCTGCGCGGGATTGTATTGAAAGGATCAAATCTTCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAACAGCATCCTGATCTGATAAGGCCTGACTGGGACAACGTCAAAATCGATGTTATGTACGCAGCACTGAAATGCAAATTCTCCACATATCCGCGGCTGAGTTCTATGCTAGTTTCAACTGCTGGTTCGGTTCTAGTTGAGGCTTCTCCACATGATCTCTTCTGGGGTGGCGGTCGAGAAGGAGAAGGCTTGAATTATCTTGGACGACTTTTGATGAAGTTGAGATCAGAGTTTGTTGAGGAATCATCATCATCATCATCATCAATTGTTTTGACTTGGACATAA 1263 0.4386 MEPGDCDGDNTAVSALLQGGVQRVVIGMRHPLQHFRGNAVRALRSQGLQVDLLGEDLTSKLIEDAQKECLLVNAPLICRAHSRVPFSVLKYAMTLDGKIAASTGHAWWISSKKSRKLVFELRARSDAIIVGGNTVRRDNPRMTARHGVFWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQAINLVDVCYEQIGPDMLVSGFLQPIPDTAPTIPSPEKTFVVDPTVSRYESGIIFFYKTWDPYGALSNFSPHPIQMPDENGDSVTWLSVQHYYQAHKFVGVDDTAARDCIERIKSSKSPEEAARIGRSMQKQHPDLIRPDWDNVKIDVMYAALKCKFSTYPRLSSMLVSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMKLRSEFVEESSSSSSSIVLTWT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01642 420 NCBIfam conserved hypothetical protein 250 404 IPR012816 -
Vifa5g01642 420 Gene3D Dihydrofolate Reductase, subunit A 148 218 IPR024072 -
Vifa5g01642 420 SUPERFAMILY YbiA-like 237 407 IPR037238 -
Vifa5g01642 420 Gene3D - 239 412 IPR037238 -
Vifa5g01642 420 Pfam NADAR domain 251 404 IPR012816 -
Vifa5g01642 420 PANTHER DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) 78 146 - -
Vifa5g01642 420 Pfam RibD C-terminal domain 148 214 IPR002734 GO:0008703|GO:0009231
Vifa5g01642 420 Pfam RibD C-terminal domain 87 146 IPR002734 GO:0008703|GO:0009231
Vifa5g01642 420 FunFam Swarming motility protein ybiA 235 408 - -
Vifa5g01642 420 Gene3D Dihydrofolate Reductase, subunit A 58 147 IPR024072 -
Vifa5g01642 420 CDD NADAR 249 402 IPR012816 -
Vifa5g01642 420 SUPERFAMILY Dihydrofolate reductase-like 84 216 IPR024072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01642 Vifa-Chr5 483333923 483340255 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01642 K11752 - gmx:100801283 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01642 5 483333923 483340255 Vifa5g01642 5 483333923 483340255 ECH