Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00656 ATGGATCTTAAAGAAAGATTGGTGTTTTTCCTTGTGGGGTTGTTTCTTTTGCAACTTTTTTCGGTTGCCAATGCCAATTTGGTTTTCCCTGTTGAACGCAAATTCAAAGGCTCCGTTGAAAACCTTGCTGCTATCAGAGATCACGATGCTCAGCGCCGAGGAAGATTTCTCTCTGCCGTTGATATCCCTCTCGGTGGCAATGGTCGTGCCAATTCAAATGGGCTGTATTTTACAAAAATTGGGCTTGGCTCTCCCGCGAAGGACTACTATGTGCAGGTTGATACAGGAAGTGACATTCTGTGGGTGAATTGTGTTGGCTGCACAACATGTCCCAGGAAAAGTGGTCTTGGTATGGACTTAACCCTCTACGACCCTGCACAATCCACAACTTCAACTTTAGTTGGTTGTAACGATGACTTTTGCACTTCCACATATAATGGTCCTATTTCTGGCTGCTCAAGAGACATGGCCTGTCCGTACAGCATAACTTACGGAGATGGAAGTACAACCACTGGGTCCTATATTAAGGATTATATTACATTCAACCAAGCCAATGGTGATCTCAAGACTGTACCAGATAATAGCACTGTTATTTTTGGGTGTGGAGCTAAACAATCTGGGACACTCAGTTCAGGTTCTGAGGAATCCCTTGATGGAATAATTGGTTTAGGACAATCAAATGCGTCTGTGCTTTCACAACTTGCTGCAGCTGGAAAGTCTACTGACTATTTTAGGGCACACTACAATGTGAATTTGAAGGACTTGGAGGTTGGTGGGGATAGTGTACAACTCCCCACAGATATATTTGATTTGTCAAGTGGGAGGGAAGCAATTATAGATAGTGGTACAACCCTGGCTTATCTTCCATCCACAGTTTATGATCAAATATTAGAGAAGGTTTTGGCTGCACAGCCTGGAATGAAATTATATCTTGTTGAAGAACAATTTACATGTTTCCGTTTTGATGATAATGTTGATGATGGATTTCCAATTGTCAAGTTTACCTTTGATGAGGGACTTACTCTGACAACTTATCCTCATGATTATCTATTCCTGTTTAAAGAAAACATGTGGTGTGTTGGCTGGCAAAAAAGTATTGCACAAAGTAAGGATGGACAGGAGATAATTCTTCTTGGAGATTTGGTGCTGTCAAACAAGTTAGTTGTATATGATCTTGAAAACATGACCATTGGATGGACTGACCACAATTGCTCTTCCAGCATCAAAGTGAAGGATGATAAAACTGGAAAGGTATATGCAGTGAGCGCACATGATCTTTCTTCAGCTTCCACCGTGATAATTGGAAGTGTGTTAACGCTCTTAATGATGCTTATTACAATGCTAAGCTCTTAA 1353 0.4124 MDLKERLVFFLVGLFLLQLFSVANANLVFPVERKFKGSVENLAAIRDHDAQRRGRFLSAVDIPLGGNGRANSNGLYFTKIGLGSPAKDYYVQVDTGSDILWVNCVGCTTCPRKSGLGMDLTLYDPAQSTTSTLVGCNDDFCTSTYNGPISGCSRDMACPYSITYGDGSTTTGSYIKDYITFNQANGDLKTVPDNSTVIFGCGAKQSGTLSSGSEESLDGIIGLGQSNASVLSQLAAAGKSTDYFRAHYNVNLKDLEVGGDSVQLPTDIFDLSSGREAIIDSGTTLAYLPSTVYDQILEKVLAAQPGMKLYLVEEQFTCFRFDDNVDDGFPIVKFTFDEGLTLTTYPHDYLFLFKENMWCVGWQKSIAQSKDGQEIILLGDLVLSNKLVVYDLENMTIGWTDHNCSSSIKVKDDKTGKVYAVSAHDLSSASTVIIGSVLTLLMMLITMLSS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00656 450 Gene3D Acid Proteases 244 401 IPR021109 -
Vimu6g00656 450 ProSiteProfiles Peptidase family A1 domain profile. 76 400 IPR033121 -
Vimu6g00656 450 Pfam Xylanase inhibitor N-terminal 76 244 IPR032861 -
Vimu6g00656 450 PRINTS Pepsin (A1) aspartic protease family signature 376 391 IPR001461 GO:0004190|GO:0006508
Vimu6g00656 450 PRINTS Pepsin (A1) aspartic protease family signature 277 288 IPR001461 GO:0004190|GO:0006508
Vimu6g00656 450 PRINTS Pepsin (A1) aspartic protease family signature 82 102 IPR001461 GO:0004190|GO:0006508
Vimu6g00656 450 Gene3D Acid Proteases 58 243 IPR021109 -
Vimu6g00656 450 PANTHER ASPARTYL PROTEASES 240 398 IPR001461 GO:0004190|GO:0006508
Vimu6g00656 450 Pfam Xylanase inhibitor C-terminal 247 400 IPR032799 -
Vimu6g00656 450 CDD pepsin_A_like_plant 76 404 IPR034161 -
Vimu6g00656 450 SUPERFAMILY Acid proteases 70 408 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00656 Vimu-Chr6 7707981 7712641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00656 58 409 Miscellaneous Gene Families AT1G44130 24.060 2.50e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00656 - - gmx:100792305 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00656 6 7707981 7712641 Vimu6g00656 6 7707981 7712641 ECH