Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00148 ATGGATCTCAGAGAAAGATTGGTGCTTCTTCTTGTGGGGTTGTTGTTCGTTGTGCAACTTTGTTGCCATGCCAATGCGAATTTGGTGTTCCCTGTTGTGCGCAAATTCAAAGGTCCCATTGTAAACCTTGCTGCTATCAAAGCTCATGATGCTGGTCGCCGAGGTAGATTTCTCTCTGTCGTTGATGTCCCTCTTGGTGGCAATGGCCGTGCTAATTCAAATGGGCTGTATTACACCAAAATTGGGCTTGGCTCTCCTCCAAAGGACTACTATGTGCAAGTTGATACAGGAAGTGACATTCTGTGGGTGAATTGTGTTGGCTGCACATCATGTCCCAAGAAAAGTGGTCTTGGTATGGACTTGACCCTCTATGACCCTAACGCATCCCAAACTTCAAATGTGATTTCTTGTGATGATGAATTTTGCACTACCACATATGATGGTCCAATTTCTGGCTGCAAAAAAGACATGTCCTGCCCGTACAGCATAACTTATGGAGATGGAAGTACGACCACTGGGTCCTATATTAAGGATTATCTTACATTTGACCGAGTCAATGGCAATCTCCAAACTGTACCAGATAATGGCACTGCGATTTTTGGGTGTGGTGCTAAACAATCTGGGACATTGACTTCAACTACTGATGAATCCCTTGATGGAATAATTGGTTTTGGACAAGCAAATTCTTCCGTGCTTTCACAGCTTGCTGCAGCTGGAAAGGTGAAAAGGGTATTTTCACACTGCCTTGACAGTATTAATGGAGGAGGAATATTTGCCATAGGGGAAGTGGTGCAGCCAAAATTTAAGACAACTTCATTGGTACCAAGAATGGCACACTACAATGTGATTTTGAAGGACATGGAGGTTGGTGGGGACTCTATACAGCTCCCCACAGATATATTTGATTCTTCAAATGGGAGGGGAACAATAATAGATAGTGGTACAACCTTGGCTTATCTTCCAGAATCGATTTATGAGCAGCTATTGGAGAAGGGTATGGTGATGTCAGATTGTCATGTTGATGATGGATTTCCAACTGTCAAGTTTACCTTTGAGGAGGGGCTTACTCTGACAGCTTATCCTCACGATTACCTATTCCTGTTTAAAGATGACATGTGGTGTGTTGGCTGGCAAAAAAGTATGGCACAAACTAAGGACGGACAGGACCTAATTCTTCTTGGAGATATGGTGCTGTCAAACAAATTAGTCGTATATGATCTTGAAAATATGACCATTGGATGGGCTGAGTACAATTGCTCTTCCAGCATCAAAGTGAAGGATGATAAGACTGGATCTGTATATACAGTGGGCGCACACGATCTTTCTTCAGCTTCTACCGTGCTAATTGGAAAAATATTAACGTTCTTTGTGTTGCTTATTACCATGCTAAGCACTTAA 1398 0.4263 MDLRERLVLLLVGLLFVVQLCCHANANLVFPVVRKFKGPIVNLAAIKAHDAGRRGRFLSVVDVPLGGNGRANSNGLYYTKIGLGSPPKDYYVQVDTGSDILWVNCVGCTSCPKKSGLGMDLTLYDPNASQTSNVISCDDEFCTTTYDGPISGCKKDMSCPYSITYGDGSTTTGSYIKDYLTFDRVNGNLQTVPDNGTAIFGCGAKQSGTLTSTTDESLDGIIGFGQANSSVLSQLAAAGKVKRVFSHCLDSINGGGIFAIGEVVQPKFKTTSLVPRMAHYNVILKDMEVGGDSIQLPTDIFDSSNGRGTIIDSGTTLAYLPESIYEQLLEKGMVMSDCHVDDGFPTVKFTFEEGLTLTAYPHDYLFLFKDDMWCVGWQKSMAQTKDGQDLILLGDMVLSNKLVVYDLENMTIGWAEYNCSSSIKVKDDKTGSVYTVGAHDLSSASTVLIGKILTFFVLLITMLST 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00148 465 ProSiteProfiles Peptidase family A1 domain profile. 77 415 IPR033121 -
Pumo5g00148 465 Pfam Xylanase inhibitor N-terminal 77 261 IPR032861 -
Pumo5g00148 465 CDD pepsin_A_like_plant 77 419 IPR034161 -
Pumo5g00148 465 Gene3D Acid Proteases 334 425 IPR021109 -
Pumo5g00148 465 Gene3D Acid Proteases 262 333 IPR021109 -
Pumo5g00148 465 FunFam Eukaryotic aspartyl protease family protein 67 261 - -
Pumo5g00148 465 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Pumo5g00148 465 PRINTS Pepsin (A1) aspartic protease family signature 391 406 IPR001461 GO:0004190|GO:0006508
Pumo5g00148 465 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Pumo5g00148 465 PANTHER ASPARTYL PROTEASES 10 413 IPR001461 GO:0004190|GO:0006508
Pumo5g00148 465 Gene3D Acid Proteases 64 261 IPR021109 -
Pumo5g00148 465 Pfam Xylanase inhibitor C-terminal 341 415 IPR032799 -
Pumo5g00148 465 Pfam Xylanase inhibitor C-terminal 279 330 IPR032799 -
Pumo5g00148 465 SUPERFAMILY Acid proteases 71 423 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00148 Pumo-Chr5 4377749 4383081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00148 59 424 Miscellaneous Gene Families AT1G44130 26.500 1.91e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00148 - - gmx:100779846 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00148 5 4377749 4383081 Pumo5g00148 5 4377749 4383081 ECH