Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01653 ATGGCTCTAAATCTCTGCACCTCCCCTAAATGGATTCGCACCACCGTCTTCGATAGTGCTTCTTCATCGAAGCCATCACTTGCTGCTTCTTCTTCTTCTTCTACAACTTCATTTTCTTCTTCAATTCTAAGTTCGAAGAGTGTTGGTCTACAGAGGTTAAGCTTGAAGAGGAATGTTGGTGTGAGTGTTAGATCTAGCTTGGAAACTGCGGGACCCACTGTGACGGTAGGGAAAGTAACTGAGGTCAATAAGGATACGTTTTGGCCCATCGTTAATGCCGCCGGTGATAAAACCGTCGTCCTCGATATGTTCACCAAATGGTGTGGTCCTTGCAAAGTGATTGCTCCATTATACGAAGAATTATCTCAAAAGTATTTGGATGTTGTATTTCTAAAGCTTGATTGCAACCAAGATAACAAGTCCTTGGCAAAAGAACTAGGAATTAAGGTGGTTCCCACTTTTAAAATTCTGAAGGACAGCAAGATTGTAAAAGAAGTAACTGGTGCTAAATTTGATGATTTGCTCGCTGCCATTGACAGTGTTCGGTCTAGTTAG 555 0.4198 MALNLCTSPKWIRTTVFDSASSSKPSLAASSSSSTTSFSSSILSSKSVGLQRLSLKRNVGVSVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDSKIVKEVTGAKFDDLLAAIDSVRSS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01653 184 PRINTS Thioredoxin family signature 107 116 - -
Vifa5g01653 184 PRINTS Thioredoxin family signature 99 107 - -
Vifa5g01653 184 PRINTS Thioredoxin family signature 147 158 - -
Vifa5g01653 184 CDD TRX_family 85 179 - -
Vifa5g01653 184 ProSiteProfiles Thioredoxin domain profile. 59 183 IPR013766 -
Vifa5g01653 184 Gene3D Glutaredoxin 63 183 - -
Vifa5g01653 184 PANTHER THIOREDOXIN-LIKE PROTEIN 1 78 179 - -
Vifa5g01653 184 ProSitePatterns Thioredoxin family active site. 100 118 IPR017937 -
Vifa5g01653 184 SUPERFAMILY Thioredoxin-like 73 181 IPR036249 -
Vifa5g01653 184 Pfam Thioredoxin 79 178 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01653 Vifa-Chr5 487652930 487654016 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01653 K03671 - gmx:100306555 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01653 5 487652930 487654016 Vifa5g01653 5 487652930 487654016 ECH