Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3004 ATGGATCACACAAGAGGAGGGTTGTTGTTGTTGTTGCTTGCTGTATTGGGATTGCTGCACGTTGCCAATGCTAATTTGGTCCTCCCTGTTGAACGAAAATTTAAAGGGCCGTTTCAGAATTTAGGTGCCATTAAAGCTCATGATGCTCATCGCCGAGGTAGATTTCTCTCTGCTGTTGATGTTCCCCTTGGTGGTAATGGCCGTCCTGCTTCAACTGGGCTATATTATACCAAAATTGGGCTCGGCACTCCGGCAAAGAACTACTATGTGCAAGTTGATACAGGAAGTGACATTCTATGGGTGAATTGTGTTGCCTGCAAACAATGCCCCACAAAAAGTACTCTTGGGATGGATTTGACCCTCTTTGATCCAAACGCCTCTCAAACTTCAAAGATTGTTCCTTGTGATGATAACTTTTGCACTTCCACATATGAAGGTGAAATTGATGGTTGCAACAAAGAGATGGCCTGCCCGTACAGCATAACTTATGGAGATGGAAGTACAACCACTGGGACCTATGTGAAGGATCTTCTTACTTTTAACAAACTTAGTGGTAATAACCAAACTGCACCAGAAACTAGCAGTGTGGTTTTCGGGTGTGGTCAAAAACAATCTGGGACATTGAGTTCATCTCAACAAGAAGCCCTGGATGGAATAATTGGTTTTGGACAATCAAATTCTTCTGTGCTTTCACAACTTGCTGCATCTGGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACAGTATAAATGGAGGAGGGATATTTGCTATAGGGGAAGTGGTGCAGCCAAAATTTAATACAACATCTTTGGTACCAAGAATGGCACACTATAACGTGGTTTTGAAGGATATGGAGGTTGGTGGGGATGTTATTCAGCTCCCCACAGATTTCTTTGGCACTGGAAATGGGAGAGGAACAATTATAGATAGTGGTACAACCTTGGCTTATCTTCCAGCCATGGTTTATGACCAGCTAGTGCCGAAGATTTTGGGTCAGCAGGCTGGACTGAAATTATATCTTGTTGAGGACCAATTTACTTGTTTCCATTTCAGTGGCAAACTTGATGCTGGATTTCCAGCTGTCAAGTTTCACTTTGAGGGGCTTTCTCTAATAGCTCAACCTCACGACTACCTCTTCCAGTTTCAAGGAGACATGTATTGTATTGGCTGGCAGAAAAGTACGGCGCAAACCAAGGATGGACAGGAACTGATTCTTCTTGGAGATTTGGTGCTGTCAAACAAAATAGTCGTGTATGATCTTGAAAATATGACCATTGGATGGACTGATTACGATTGCTCTTCCAGCATCAAAGTGAAGGATGAAACGACTAAATCTGTATATACAGTGGGTGCTCAAGACATTTCTTCTGGTTCCACCGGATTAACTGGAAGCATATTGACGTTCTGTTTGTTGATTATTGCCATTATAAACATTTAA 1440 0.4215 MDHTRGGLLLLLLAVLGLLHVANANLVLPVERKFKGPFQNLGAIKAHDAHRRGRFLSAVDVPLGGNGRPASTGLYYTKIGLGTPAKNYYVQVDTGSDILWVNCVACKQCPTKSTLGMDLTLFDPNASQTSKIVPCDDNFCTSTYEGEIDGCNKEMACPYSITYGDGSTTTGTYVKDLLTFNKLSGNNQTAPETSSVVFGCGQKQSGTLSSSQQEALDGIIGFGQSNSSVLSQLAASGKVKKIFSHCLDSINGGGIFAIGEVVQPKFNTTSLVPRMAHYNVVLKDMEVGGDVIQLPTDFFGTGNGRGTIIDSGTTLAYLPAMVYDQLVPKILGQQAGLKLYLVEDQFTCFHFSGKLDAGFPAVKFHFEGLSLIAQPHDYLFQFQGDMYCIGWQKSTAQTKDGQELILLGDLVLSNKIVVYDLENMTIGWTDYDCSSSIKVKDETTKSVYTVGAQDISSGSTGLTGSILTFCLLIIAIINI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3004 479 ProSiteProfiles Peptidase family A1 domain profile. 75 429 IPR033121 -
Lja1g3004 479 PANTHER ASPARTYL PROTEASES 9 450 IPR001461 GO:0004190|GO:0006508
Lja1g3004 479 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Lja1g3004 479 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Lja1g3004 479 PRINTS Pepsin (A1) aspartic protease family signature 307 318 IPR001461 GO:0004190|GO:0006508
Lja1g3004 479 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 450 - -
Lja1g3004 479 Gene3D Acid Proteases 261 460 IPR021109 -
Lja1g3004 479 Pfam Xylanase inhibitor N-terminal 75 259 IPR032861 -
Lja1g3004 479 Pfam Xylanase inhibitor C-terminal 277 429 IPR032799 -
Lja1g3004 479 Gene3D Acid Proteases 57 260 IPR021109 -
Lja1g3004 479 CDD pepsin_A_like_plant 75 433 IPR034161 -
Lja1g3004 479 SUPERFAMILY Acid proteases 69 437 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3004 Lja-Chr1 36430631 36436292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3004 57 434 Miscellaneous Gene Families AT1G44130 26.263 3.44e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3004 - - gmx:100779846 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3004 1 36430631 36436292 Lja1g3004 1 36430631 36436292 ECH