Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00152 ATGGCCCTGTCGTGTCTCACTCTCACTGCCAACCCTTCTTCCATTATCTGCAAATGCAAAGCCTCCCTCCCCACCGCCCCCCACGCGCTCGACGCCACCTACATCCGACGCGCCGCCCACCTCGCCGACAAATCCGCCGGCTTCACCTCCCCCCACCCCAACTTCGGCTGCGTCATCGTCTCCCCCGACGGCGCCGTCGCCGGCGAGGGCTATCTTTACGCCCAGGGCACCGCCTCCGCCGAGGTCCAGGCCGTCGCCGCCGCCGGCGAACTCTGCCGCGGCGCTACCGCCTACCTCAACATGGAGCCCGGCGACTGCCACGGCGACCACAGCGCCGTGTCCGCTCTGCTCCAGGGAGGGGTCAGAAGGGTTGTGATTGGAATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTGCGTGCACTCAGAAATCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTATTCTCATTGAGGATGCACAGAAGGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGATCTGCTTCGCGTGTTCCCTTTTCTGTTCTCAAGTATGCTATGACGCTTGATGGAAAAATTGCTGCTAGCTCTGGCCATGCATCATGGATAAGCAGCAAGCAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACGGTTCGAAGGGACAATCCAAGGCTAACGGCCAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGGAAGCAAACCTGTGGGACATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGGAAGAGTTTCCAGAAGTTGCTTGCATCTAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATCCCAGGGAAGTGATGGAGTATTTTCATGATCGTGGGTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCCGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACTCGATGAAACTTTTGTTGTTGATCCTACTGTCTCACCGTATGAATCAAGGATCATATTTTTCTATAAAACATGGGATCCTTACGGTGCATTGTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGTTGAGTGTTGAGCATTACTACCAGGCACACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAAGGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAACTCAAAGGCAGAAACCTGATCTGATAAGGTCTGACTGGGAGAACATAAAGATTGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACATTTGAATTCTATGCTGCTATCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCACCACATGATCTGTTTTGGGGTGGAGGCCGAGAGGGAGAAGGCTTAAATTATCTTGGCAGACTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCTAGTGAGACCCCTAGTTTAACTGTATAG 1782 0.4882 MALSCLTLTANPSSIICKCKASLPTAPHALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPDGAVAGEGYLYAQGTASAEVQAVAAAGELCRGATAYLNMEPGDCHGDHSAVSALLQGGVRRVVIGMRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSILIEDAQKECLLVNAPLICRSASRVPFSVLKYAMTLDGKIAASSGHASWISSKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLDLPEEANLWDMSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDILNPREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSLDETFVVDPTVSPYESRIIFFYKTWDPYGALSNFSPHPIQMPDENGDYVTWLSVEHYYQAHKFIGVDDPLAQDCVERIKSAKSPEEAARIGRSTQRQKPDLIRSDWENIKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMKLRSEFLGESSSSETPSLTV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00152 593 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 32 127 IPR002125 -
Pumo5g00152 593 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 36 389 IPR004794 GO:0008835|GO:0009231
Pumo5g00152 593 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 151 IPR002125 -
Pumo5g00152 593 NCBIfam conserved hypothetical protein 425 578 IPR012816 -
Pumo5g00152 593 SUPERFAMILY YbiA-like 412 581 IPR037238 -
Pumo5g00152 593 PANTHER DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) 178 395 - -
Pumo5g00152 593 Pfam RibD C-terminal domain 187 389 IPR002734 GO:0008703|GO:0009231
Pumo5g00152 593 Gene3D Dihydrofolate Reductase, subunit A 177 393 IPR024072 -
Pumo5g00152 593 NCBIfam riboflavin-specific deaminase C-terminal domain 184 390 IPR011549 GO:0008703|GO:0009231|GO:0050661
Pumo5g00152 593 FunFam Swarming motility protein ybiA 418 583 - -
Pumo5g00152 593 Gene3D - 416 586 IPR037238 -
Pumo5g00152 593 SUPERFAMILY Dihydrofolate reductase-like 185 391 IPR024072 -
Pumo5g00152 593 Pfam NADAR domain 426 579 IPR012816 -
Pumo5g00152 593 CDD Riboflavin_deaminase-reductase 35 147 - -
Pumo5g00152 593 Gene3D Cytidine Deaminase, domain 2 29 158 - -
Pumo5g00152 593 CDD NADAR 424 577 IPR012816 -
Pumo5g00152 593 SUPERFAMILY Cytidine deaminase-like 31 152 IPR016193 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00152 K11752 - gmx:100801283 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00152 5 4439341 4451434 Pumo5g00152 5 4439341 4451434 ECH