Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0542 ATGATGGATCTTACACAAAGATTGACGCTTTTCCTTGTGGCGTTGTTTGTTTTGCAACTTTGTTCTGTCGCCAATGCCAATTTGGCTTTCCCTGTTGAACGCAAATTCAAAGGCCCCGTTCAAAACCTCGCTGCTCTCAAAGATCATGATGCTCTTCGTCGAGGAAGGTTTCTCTCTGCCGTTGATGTCCCTCTTGGTGGCAATGGTCGTGCCAATTCAAATGGGCTGTATTATACCAAAATTGGGATTGGCTCTCCTGTGAAGGACTTCTATGTACAAGTTGATACAGGGAGTGACATTCTGTGGGTGAATTGTGTTGGCTGCACAACATGTCCTAAGAAAAGCGGTCTTGGTATGGACTTAACCCTCTACGACCCTGAGGCATCCAAAAGTTCAACTATGATTGGTTGTGACAATGACTTTTGCACTTCCACATATGATGGTCCTATTTCTGGATGCACAAAAGACATGTCCTGCCCATACAGCATAACTTATGGAGATGGAAGTACGACCTCTGGATCCTATGTGAAGGATTATCTTACATTCGACCGAGCCAGTGGTGATCTCAAAACTGTACCGGAAAATAGCACTGTGATTTTTGGGTGTGGAGCTAGACAATCTGGGACATTAAGTTCAGGTTCTGATGAATCCCTTGATGGAATAATTGGTTTAGGACAAGCAAATTCGTCTGTGCTTTCACAGCTTGCTGCAGCTGGAAAGGTGAAAAGGGTATTTTCACACTGCCTTGACAGTTTTACTGGAGGAGGAATATTTGCCATAGGGGAAGTAGTGGAGCCAAAATTTAACAAAACTTCATTGGTACCAAAAATGGCACACTACAATGTGATTTTGAAGGACTTGGAGGTTGGTGGGGAGACTGTACAACTACCCACAGATATATTTGATTTTACAACTGGGAGGGGAACAATTATAGATAGTGGTACAACCCTGGCTTATCTTCCACCCACAGTTTATGAGCAACTATTGGAGAAGGTTTTGGCACCACAGTCTGGAATGAAATTATATCTCGTTGAAGATCAATTTACATGTTTCCGTTTTGATGACAATATTGACAAGGGATTTCCAACTGTCAAGTTTACCTTCGAGGAGGGGCTTACTCTGACAGCTTATCCTCATGATTACCTATTCCTCTTTAAAGAAAACATGTGGTGTGTTGGCTGGCAAAAAAGTATGGCCCAAACTAAGGATGGACACGACATAATTCTTCTTGGAGATTTGGTGTTATCAAACAAGTTAGTAGTATATGATCTTGAAAACATGACCATTGGATGGGCTGAATACAATTGCTCTTCCAGCATCAAAGTGAAGGATGATAAGACTGGAAATGTATATTCAGTGAGCGCACATGATCTTTCTTCAGCTTCCACCATGTTAATTGGAAGTGTATTAACGCTCTTAATGATGCTTATTACAATGCTAATCTCTTAA 1449 0.4168 MMDLTQRLTLFLVALFVLQLCSVANANLAFPVERKFKGPVQNLAALKDHDALRRGRFLSAVDVPLGGNGRANSNGLYYTKIGIGSPVKDFYVQVDTGSDILWVNCVGCTTCPKKSGLGMDLTLYDPEASKSSTMIGCDNDFCTSTYDGPISGCTKDMSCPYSITYGDGSTTSGSYVKDYLTFDRASGDLKTVPENSTVIFGCGARQSGTLSSGSDESLDGIIGLGQANSSVLSQLAAAGKVKRVFSHCLDSFTGGGIFAIGEVVEPKFNKTSLVPKMAHYNVILKDLEVGGETVQLPTDIFDFTTGRGTIIDSGTTLAYLPPTVYEQLLEKVLAPQSGMKLYLVEDQFTCFRFDDNIDKGFPTVKFTFEEGLTLTAYPHDYLFLFKENMWCVGWQKSMAQTKDGHDIILLGDLVLSNKLVVYDLENMTIGWAEYNCSSSIKVKDDKTGNVYSVSAHDLSSASTMLIGSVLTLLMMLITMLIS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0542 482 Pfam Xylanase inhibitor N-terminal 77 261 IPR032861 -
Pvu8g0542 482 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Pvu8g0542 482 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Pvu8g0542 482 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Pvu8g0542 482 Pfam Xylanase inhibitor C-terminal 279 432 IPR032799 -
Pvu8g0542 482 SUPERFAMILY Acid proteases 71 440 IPR021109 -
Pvu8g0542 482 CDD pepsin_A_like_plant 77 436 IPR034161 -
Pvu8g0542 482 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 453 - -
Pvu8g0542 482 Gene3D Acid Proteases 263 442 IPR021109 -
Pvu8g0542 482 PANTHER ASPARTYL PROTEASES 5 453 IPR001461 GO:0004190|GO:0006508
Pvu8g0542 482 Gene3D Acid Proteases 60 262 IPR021109 -
Pvu8g0542 482 ProSiteProfiles Peptidase family A1 domain profile. 77 432 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0542 Pvu-Chr8 4743377 4748136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0542 41 436 Miscellaneous Gene Families AT1G77480 27.578 8.00e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0542 - - gmx:100792305 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0542 8 4743377 4748136 Pvu8g0542 8 4743377 4748136 ECH