Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02359 ATGTTGTCTCTCACTCCAATCGCCAACACCTTCTCATTTTCATCCATCATCTGTAAATGCAAAGCATCCCTTGACAATCACAGCCACGCGCTTGACGCCGGATATATCCGACGCGCCGCCCACCTCGCCGACAAATCCGCCGGATTCACTTCCCCTCACCCCAACTTCGGTTGCATCATCGCCACTCCATCTGGCGATGTCGCTGGAGAAGGCTACCTCTATGCGCAAGGCACCAGCGCCGCTGAAGTTCAGGCCGTTACCTCTGCCGGAGAACTCTCCCGGGGCGCCACCGCTTATTTAAACATGGAACCCGGTGACTGTGACGGTGATAACACTGCTGTGTCCGCTCTGCTACAGGGTGGGGTCAAAAGGGTTGTCATTGGAATGAGACATCCTTTGCAACATTTCAGAGGCAATGCTGTGCGTGCACTCAGAACTCAAGGATTGCAAGTTGATCTTCTTGGAGAGGATCTAACTAGTAAGCTTATAGAGGATGCCCAAAAAGAATGTCTTCTTGTTAACGCCCCTTTGATTTGTAGAGCTTCTTCGCGTGTTCCCTTTTCTGTTCTCAAGTATGCTATGACACTTGATGGAAAGATTGCTGCTAGCACTGGTCATGCATGGTGGATAAGCAGCAAGAAATCTAGAAGTCTAGTTTTTGAGCTGCGAGCTAGAAGCGATGCAATAATTGTAGGAGGAAATACGGTCCGAAGGGACAATCCAAGACTTACAGCGAGACATGGAGGCGGTCATATGCCAATGCGCATTGTAATGTCTCAGTCCCTTGATCTTCCTGAGGAAGCAAATTTATGGGACATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAAGAGTTTCCAGAAGCTGCTTGCATCTAAAGGAGTTGAAGTTGTGGAGTTTGACATATTAAATCCACGAGATGTTATGGAGTACTTTCACGATCGAGGATATCTTTCAGTTTTCTGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCTTCTGGAGTAATTCACAAGGTTTATGCATTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATCAACAGGTTGGGCCTGACATGCTTGTTAGCGGATTTATTCAGCCGTTACCAGACATGGCACCTACAATTCCATCACGAGAGGAAACTTTTGTAGTTGACCCTACTGTCTCACCATATGAATCCAGCATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTGTCAAATTTCTCTCCTCACCCTATTCAAATGCCCGATGAAAATGGCGATAGCGTGACTTGGTTGAGTGTGGAGCATTACTACCAGGCGCACAAGTTTGTTGGAGTGGATGATACTTCTGCACAGGATTGTTTGGAAAGGATCAAATCTGCAAGAAGTCCGGAAGAAGCTGCAAAAATTGGAAGGTCAATGCAAAGGCAGCGTCCTGATCTGATAAGGCCTGAGTGGGACAACATGAAGATCGATGTGATGTACTCGGCACTGAAATGCAAGTTCTCAACGTATCCGCATTTGAGTTCTATGTTGGTTTCAACTGCTGGTTCTGTTCTAGTTGAGGCTTCTCCGCATGATCTCTTTTGGGGTGGAGGTCGAGAAGGAGAAGGCTTGAATTATCTTGGACGACTGTTGATGAAATTGAGGTCAGAGTTTATTGAGGAATCATCGTCGTCAAGTGAGTCCCCTAGTTTAGCTGTATAG 1788 0.4614 MLSLTPIANTFSFSSIICKCKASLDNHSHALDAGYIRRAAHLADKSAGFTSPHPNFGCIIATPSGDVAGEGYLYAQGTSAAEVQAVTSAGELSRGATAYLNMEPGDCDGDNTAVSALLQGGVKRVVIGMRHPLQHFRGNAVRALRTQGLQVDLLGEDLTSKLIEDAQKECLLVNAPLICRASSRVPFSVLKYAMTLDGKIAASTGHAWWISSKKSRSLVFELRARSDAIIVGGNTVRRDNPRLTARHGGGHMPMRIVMSQSLDLPEEANLWDMSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDILNPRDVMEYFHDRGYLSVFWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQALNLIDVCYQQVGPDMLVSGFIQPLPDMAPTIPSREETFVVDPTVSPYESSIIFFYKTWDPYGALSNFSPHPIQMPDENGDSVTWLSVEHYYQAHKFVGVDDTSAQDCLERIKSARSPEEAAKIGRSMQRQRPDLIRPEWDNMKIDVMYSALKCKFSTYPHLSSMLVSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMKLRSEFIEESSSSSESPSLAV 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02359 595 Gene3D Dihydrofolate Reductase, subunit A 178 394 IPR024072 -
Trre13g02359 595 Pfam RibD C-terminal domain 188 390 IPR002734 GO:0008703|GO:0009231
Trre13g02359 595 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 30 152 IPR002125 -
Trre13g02359 595 Pfam NADAR domain 427 580 IPR012816 -
Trre13g02359 595 NCBIfam conserved hypothetical protein 426 580 IPR012816 -
Trre13g02359 595 Gene3D - 417 588 IPR037238 -
Trre13g02359 595 Gene3D Cytidine Deaminase, domain 2 21 160 - -
Trre13g02359 595 FunFam Swarming motility protein ybiA 419 584 - -
Trre13g02359 595 SUPERFAMILY YbiA-like 413 583 IPR037238 -
Trre13g02359 595 CDD Riboflavin_deaminase-reductase 36 148 - -
Trre13g02359 595 SUPERFAMILY Dihydrofolate reductase-like 185 392 IPR024072 -
Trre13g02359 595 PANTHER DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) 179 396 - -
Trre13g02359 595 NCBIfam riboflavin-specific deaminase C-terminal domain 185 391 IPR011549 GO:0008703|GO:0009231|GO:0050661
Trre13g02359 595 SUPERFAMILY Cytidine deaminase-like 32 153 IPR016193 GO:0003824
Trre13g02359 595 CDD NADAR 424 577 IPR012816 -
Trre13g02359 595 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 37 390 IPR004794 GO:0008835|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02359 Trre-Chr13 21316049 21320918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02359 K11752 - gmx:100801283 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02359 13 21316049 21320918 Trre13g02359 13 21316049 21320918 ECH