Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00856 ATGATGGCATTCTCGTCTCTCACTCCCATCTTCAACCCTTCTTCCATTATCTGCAAATGCAAAGCCTCCATTGACACTCGCGACCACGCGCTCGACGCCGCTTACATCCGACGCGCCGCCCTCCTTGCCGACAAATCCGCTGGCTTCACTTCCCCCCACCCTAACTTCGGCTGCGTCATCGCCACCCCCTCCGGCGATGTTGCCGGTGAGGGCTACCTCTACGCGCAGGGCACCACCCCCGCCGAAGTGCAGGCCGTCGACGCTGCCGGCGAACGCTCCCGCGGCGCCACCGCTTACCTCAACATGGAACCCGGTGACTGTGATGGCGACAACGCTGCTATCTCCGCTCTGCTCCAGGGAGGGATCAAGAGGGTTGTCATTGGAATGAGACATCCACTGCATCATCTCCGGGGAAATGCTGTGCGTGCACTCAGAAGTCAAGGATTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAAGCTTATTGAGGATGCCCAGAAAGAATGTCTTCTTGTCAATGCCCCTTTGATTTGTAGAGCTGCTTCACGTGTTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGGAAAAATCGCTGCTAGCTCTGGCCATGCATCTTGGATAAGCAGCAAGCAATCTAGAAATCTAGTTTTTGAGCTTCGAGGTAGAAGTGATGCAGTTATTGTGGGAGGAAACACAGTTCGAAGGGACAATCCAAGACTGACGGCCAGACATGGAGGTGGCCATATGCCAATGCGCATTGTAATGACCCAGACTCTCAATCTTCCGGAGGAAGCAAACCTATGGGACATGTCTGAGGTTTCTACCATAGTTGTAACACAGAGGGGTGCAAGGAGGAGTTTTCAGAAGGTTCTTGCATCTAAGGGAGTTGAGGTTGTGGAGTTTGACATGTTAAATCCCCGAGATGTTATGGAGTATTTTCATGATCGTGGGTATCTTTCAATTTTATGGGAGTGTGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTTTGCATTTGTTGCTCCTAAAATAATTGGTGGAAAGAATGCACCATCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTATAAATCTAATTGATGTTTGCTATGAGCAGGTTGGACCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCAACAATTCCCTCCCCGGAGGAAACCTTTGTTGTTGATCCGACTGTCTCACCATATGAGTCCAGCATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTGTCAAATTTCTCTCCTCATCCCATTCAAGTGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTGGAGCATTACTACCAGGTACTTGTTTTCTTTGGATAA 1419 0.487 MMAFSSLTPIFNPSSIICKCKASIDTRDHALDAAYIRRAALLADKSAGFTSPHPNFGCVIATPSGDVAGEGYLYAQGTTPAEVQAVDAAGERSRGATAYLNMEPGDCDGDNAAISALLQGGIKRVVIGMRHPLHHLRGNAVRALRSQGLHVDLLGEDLTSKLIEDAQKECLLVNAPLICRAASRVPFSVLKYAMTLDGKIAASSGHASWISSKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLNLPEEANLWDMSEVSTIVVTQRGARRSFQKVLASKGVEVVEFDMLNPRDVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGDLGMVEMSQAINLIDVCYEQVGPDMLISGFLQPLPDMVPTIPSPEETFVVDPTVSPYESSIIFFYKTWDPYGALSNFSPHPIQVPDENGDYVTWMSVEHYYQVLVFFG. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00856 472 PANTHER DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) 179 396 - -
Seca2g00856 472 Gene3D Dihydrofolate Reductase, subunit A 178 394 IPR024072 -
Seca2g00856 472 CDD NADAR 424 466 IPR012816 -
Seca2g00856 472 Gene3D - 417 471 IPR037238 -
Seca2g00856 472 Pfam RibD C-terminal domain 188 390 IPR002734 GO:0008703|GO:0009231
Seca2g00856 472 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 37 390 IPR004794 GO:0008835|GO:0009231
Seca2g00856 472 SUPERFAMILY YbiA-like 413 468 IPR037238 -
Seca2g00856 472 CDD Riboflavin_deaminase-reductase 36 148 - -
Seca2g00856 472 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 30 144 IPR002125 -
Seca2g00856 472 SUPERFAMILY Dihydrofolate reductase-like 185 392 IPR024072 -
Seca2g00856 472 Gene3D Cytidine Deaminase, domain 2 21 160 - -
Seca2g00856 472 NCBIfam riboflavin-specific deaminase C-terminal domain 185 391 IPR011549 GO:0008703|GO:0009231|GO:0050661
Seca2g00856 472 SUPERFAMILY Cytidine deaminase-like 32 153 IPR016193 GO:0003824
Seca2g00856 472 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 34 129 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00856 Seca-Chr2 13123020 13128503 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00856 K11752 - gmx:100801283 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00856 2 13123020 13128503 Seca2g00856 2 13123020 13128503 ECH