Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02686 ATGCTGAAAATTGGATTAGAAGCAAAGAAGGAAAGGAAGAAGAAGAAGGAAAACTACCCTTTACCTCGAATGATGGATCTTAGACAAAGATTGACGTTTTTCCTTGTGGCGTTGTTTGTTTTGCAACTTTGTTGTGTCGCCAATGCCAATTTGGCTTTCCCTGTTGAACGCAAATTCAAAGGCCCCGTCGAAAACCTCGCTACTATCAAAGATCATGATGCTCGTCGTCGAGGAAGGTTTCTCTCTGCCGTTGATGTCCCTCTTGGTGGCAATGGTCGTGCCAATTCAAATGGGCTGTATTATACCAAAATTGGGATTGGCTCTCCTGTGAAGGACTACTATGTACAAGTTGATACAGGGAGTGACATTCTGTGGGTGAATTGTGTTGGCTGCACAACATGTCCCAAGAAAAGCGGTCTTGGTATGGACTTAACCCTCTACGACCCTGAGCAATCCAAAACTTCAACTATGATTGGTTGTGACAATGACTTTTGCACTTCCACATATGATGGTCCTATTTCTGGATGCACAAAAGAAATGTCCTGCCCATACAGCATAACTTATGGAGATGGAAGTACGACCTCTGGGTCCTATGTTAAGGATTATCTTACATTCGACCGAGCCAGTGGTGATCTCAAAACTGCACCGGAAAATAGCACTGTGATTTTTGGGTGTGGAGCTAGACAATCTGGGACATTGAGTTCAGGTTCTGATGAATCCCTTGATGGAATAATTGGTTTAGGACAAGCAAATTCGTCTGTGCTTTCACAGCTTGCTGCAGCTGGAAAGGTGAAAAGGGTATTTTCACACTGCCTTGACAGTTTTAGTGGAGGAGGAATATTTGCCATAGGGGAAGTAGTGGAGCCAAAATTTAACAAAACTTCATTGGTACCAAAAATGGCACACTACAATGTGATTTTGAAGGACTTGGAGGTTGGTGGGGAGACTGTACAACTACCCACAGATATATTTGATTTTTCATCTGGGAGGGGAACAATTATAGATAGTGGTACAACCCTGGCTTATCTTCCACCCTCAGTTTATGAGCAAATATTGGAGAAGGTTTTGGCACCACAGTCTGGAATGAAATTATATCTTGTTGAAGATCAATTTACATGTTTCCGTTTTGATGATAATATTGACAAGGGATTTCCAACTGTCAAGTTTACCTTCGAGGAGGGGCTTACTCTGACAGCTTATCCTCATGATTACCTATTCCTCTTTAAAGAAAACATGTGGTGTGTTGGCTGGCAAAAAAGTATGGCCCAAACTAAGGATGGACGAGACATAATTCTTCTTGGAGATTTGGTGTTATCAAACAAATTAGTTGTATATGATCTTGAAAACATGACCATTGGATGGGCTGAATACAATTGCTCTTCCAGCATCAAAGTGAAGGATGATAAGACTGGAAATGTATATGCAATGAGCGCACATGATCTTTCTTCAGCTTCCACCATGTTAATTGGAAGTGTATTAACGCTCTTAATGATGCTTATTACAATGCTAATCTCTTAA 1518 0.4124 MLKIGLEAKKERKKKKENYPLPRMMDLRQRLTFFLVALFVLQLCCVANANLAFPVERKFKGPVENLATIKDHDARRRGRFLSAVDVPLGGNGRANSNGLYYTKIGIGSPVKDYYVQVDTGSDILWVNCVGCTTCPKKSGLGMDLTLYDPEQSKTSTMIGCDNDFCTSTYDGPISGCTKEMSCPYSITYGDGSTTSGSYVKDYLTFDRASGDLKTAPENSTVIFGCGARQSGTLSSGSDESLDGIIGLGQANSSVLSQLAAAGKVKRVFSHCLDSFSGGGIFAIGEVVEPKFNKTSLVPKMAHYNVILKDLEVGGETVQLPTDIFDFSSGRGTIIDSGTTLAYLPPSVYEQILEKVLAPQSGMKLYLVEDQFTCFRFDDNIDKGFPTVKFTFEEGLTLTAYPHDYLFLFKENMWCVGWQKSMAQTKDGRDIILLGDLVLSNKLVVYDLENMTIGWAEYNCSSSIKVKDDKTGNVYAMSAHDLSSASTMLIGSVLTLLMMLITMLIS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02686 505 PRINTS Pepsin (A1) aspartic protease family signature 332 343 IPR001461 GO:0004190|GO:0006508
Phco3g02686 505 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Phco3g02686 505 PRINTS Pepsin (A1) aspartic protease family signature 431 446 IPR001461 GO:0004190|GO:0006508
Phco3g02686 505 PANTHER ASPARTYL PROTEASES 36 453 IPR001461 GO:0004190|GO:0006508
Phco3g02686 505 Pfam Xylanase inhibitor C-terminal 302 455 IPR032799 -
Phco3g02686 505 Gene3D Acid Proteases 82 285 IPR021109 -
Phco3g02686 505 ProSiteProfiles Peptidase family A1 domain profile. 100 455 IPR033121 -
Phco3g02686 505 Pfam Xylanase inhibitor N-terminal 100 284 IPR032861 -
Phco3g02686 505 FunFam Eukaryotic aspartyl protease family protein 285 466 - -
Phco3g02686 505 SUPERFAMILY Acid proteases 94 463 IPR021109 -
Phco3g02686 505 Gene3D Acid Proteases 286 465 IPR021109 -
Phco3g02686 505 CDD pepsin_A_like_plant 100 459 IPR034161 -
Phco3g02686 505 FunFam Eukaryotic aspartyl protease family protein 90 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02686 Phco-Chr3 53386009 53390848 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02686 3 53386009 53390848 Phco3g02686 3 53386009 53390848 ECH