Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1655 ATGGATCTGAGAATTCTGTTGATTCTGCTACTAGCAGTTGAAATCTTCTGCGTTGTTGCGAATGCGAATTTGGTGTTCCCGGTGCAGCGCCGGCAAGCTAGCTTAACCGGAATCAAAGCTCACGACTCTAGCCGCCGTGGTCGAATTCTCTCCGCCGTCGATTTCAACCTTGGCGGCAATGGTCTTCCAACTGTAACCGGGCTGTATTTCACAAAAATTGGACTTGGTTCACCTTCAAAGGACTACTATGTGCAAGTTGATACAGGGAGTGACATTCTATGGGTGAATTGTGTTGAATGCACTAGATGCCCCAGGAAAAGCGATATCGGAATTGGCTTGACTCTCTATGACCCAAAGCGATCCAAAACTTCGGAGTTTGTTTCCTGTGAGCATAATTTTTGCTCTTCGACGTATGAAGGTCGGATTCTGGGTTGCAAGGCTGAAAATCCCTGCCCGTACAGCATATCTTATGGAGATGGAAGTGCGACGACTGGATACTATGTTCAGGATTATCTTACTTTTAACCGTGTCAATGGCAATCTCCATACCGCGACTCAAAATAGCAGCATCATTTTTGGGTGTGGCGCTGCACAATCTGGGACATTAGCTTCATCTTCTGAAGAAGCCCTTGATGGAATAATTGGATTTGGGCAAGCAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCTGGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACACTAATGTTGGTGGTGGAATATTTTCCATAGGGGAAGTGGTGGAACCAAAAGTCAAAACAACTCCATTGGTACCAAATATGGCACACTACAATGTGATTTTGAAGAATATTGAGGTTGATGGAGATATTCTACAGCTTCCGTCAGATACATTTGATTCTGAAAATGGGAAGGGGACAGTAATAGATAGTGGGACAACCTTGGCTTATCTTCCTAGAATAGTTTATGACCAACTAATGTCCAAGGTTTTGGCCAAGCAACCTCGACTGAAAGTATATCTTGTTGAGGAACAATATAGCTGTTTTCAGTATACTGGAAATGTTGATAGCGGATTTCCAATTGTGAAGCTTCATTTTGAGGATTCTCTTTCTCTGACAGTTTATCCTCACGACTACCTGTTCAATTATAAGGGGGATAGTTACTGGTGTATTGGCTGGCAGAAAAGTGCTTCAGAAACTAAGAATGGAAAGGACATGACCCTTCTTGGAGATTTCGTGCTCTCAAACAAACTAGTCGTATATGACCTTGAAAATATGACCATTGGATGGACGGACTACAATTGCTCTTCCAGCATTAAAGTGAAGGATGAAAAGACTGGAATCGTACATACAGTGGGTGCACACAAGATTTCTTCATCTTCTACCTATATAGTTGGTAGAATATTGACATTCTTTTTGTTGATAAGTGCAATGCTGAACAGTGTAATTAACTAA 1437 0.4203 MDLRILLILLLAVEIFCVVANANLVFPVQRRQASLTGIKAHDSSRRGRILSAVDFNLGGNGLPTVTGLYFTKIGLGSPSKDYYVQVDTGSDILWVNCVECTRCPRKSDIGIGLTLYDPKRSKTSEFVSCEHNFCSSTYEGRILGCKAENPCPYSISYGDGSATTGYYVQDYLTFNRVNGNLHTATQNSSIIFGCGAAQSGTLASSSEEALDGIIGFGQANSSVLSQLAASGKVKKIFSHCLDTNVGGGIFSIGEVVEPKVKTTPLVPNMAHYNVILKNIEVDGDILQLPSDTFDSENGKGTVIDSGTTLAYLPRIVYDQLMSKVLAKQPRLKVYLVEEQYSCFQYTGNVDSGFPIVKLHFEDSLSLTVYPHDYLFNYKGDSYWCIGWQKSASETKNGKDMTLLGDFVLSNKLVVYDLENMTIGWTDYNCSSSIKVKDEKTGIVHTVGAHKISSSSTYIVGRILTFFLLISAMLNSVIN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1655 478 Gene3D Acid Proteases 60 254 IPR021109 -
Lja5g1655 478 CDD pepsin_A_like_plant 69 429 IPR034161 -
Lja5g1655 478 Pfam Xylanase inhibitor C-terminal 271 425 IPR032799 -
Lja5g1655 478 Pfam Xylanase inhibitor N-terminal 69 253 IPR032861 -
Lja5g1655 478 PANTHER ASPARTYL PROTEASES 5 446 IPR001461 GO:0004190|GO:0006508
Lja5g1655 478 SUPERFAMILY Acid proteases 63 433 IPR021109 -
Lja5g1655 478 ProSiteProfiles Peptidase family A1 domain profile. 69 425 IPR033121 -
Lja5g1655 478 Gene3D Acid Proteases 255 437 IPR021109 -
Lja5g1655 478 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 446 - -
Lja5g1655 478 PRINTS Pepsin (A1) aspartic protease family signature 401 416 IPR001461 GO:0004190|GO:0006508
Lja5g1655 478 PRINTS Pepsin (A1) aspartic protease family signature 301 312 IPR001461 GO:0004190|GO:0006508
Lja5g1655 478 PRINTS Pepsin (A1) aspartic protease family signature 75 95 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1655 Lja-Chr5 17961469 17967565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1655 51 434 Miscellaneous Gene Families AT1G44130 24.439 1.69e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1655 - - gmx:100804123 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1655 5 17961469 17967565 Lja5g1655 5 17961469 17967565 ECH