Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00967 ATGGAACACACAGGAGGATTGCTTGTTGTTTTAGTTTTGCTTGTTCTTCTTCCACTTTGTTTTGTCAATGCCAATTTGGTTCTCCCTGTTGAACGCAAATTCAAAGGACCCGTTTCGAGTTTAGCTGCAATCAAAGCTCATGATGCTCGTCGCCATGGTAGATTTCTCTCTGCTGTTGATGTTCCCCTTGGTGGTGATGGTGCCCCTACTAGAACTGGGTTGTATTATACCAGAATTAGGCTTGGCTCTCCTAGCAAGGACTACTATGTGCAGGTTGATACAGGAAGTGATATTCTCTGGGTGAATTGTGTTGGCTGTACATCATGTCCCAAGAAAAGTAATCTTGGTATGGATTTGACCCTCTATGACCCTAACGACTCCAAAACTTCAAATGTCATTCCTTGTGATGATGATTTTTGCACTTCCATATATGATGGTCAAGTTTCTAGTTGCAAGAAAGATTCACCCTGTCCATACAGCATAACTTATGGCGATGGAAGTACAACCGGTGGGTCCTTTATAAGGGATTATCTTACATTTGACAGAGTTGATGGTAATCTCCATTATACACCAGAAAATAGCAGCGTGGTTTTTGGGTGTGGTTCTAAACAATCTGGGACGTTGACTTCATCTCAGGGAGAAGCCCTTGATGGAATTATTGGTTTTGGACAATCAAATTCTTCTGCGCTTTCACAACTTGCTGCATCTGGAAAGCTGAAAAGAGTATTTTCACACTGCCTTGACGGTATTAATGGAGGAGGCATATTTTCCATAGGGGAAGTGGTGGCGCCAAAAATTAATACAACTCCATTGGTACCAAGAATGGCACACTACAATGTGATTTTGAAGGACTTGGAGGTTGATGGGGAGTCTATAGTGCTCCCCACAGATATATTTGGTACTGGAAATGGGAGGGAAACAATAATAGATAGTGGTACAACCTTGGCTTATCTTCCAGCCTCGGTGTATGACCAGATACTGTCAAAGGTTTTGGCTCAGCAGCCTGGAATGAAATTATATACTGTTGAGGAACAATTTACTTGTTTTCATTATTCAAACAAAATAGATGATGGATTTCCAGTTATCAAGTTTCACTTTGAGGGGCTTTCTCTGATAGCTTATCCTCACGACTACCTATTCCCAATTAAAGAAGGCATGCAGTGTCTTGGCTTGATGAAAAGTAATGCACAAACTAAGGATGGAAAGGACCTGATGCTTCTTGGAGATTTGGTGCTGTCAAACAAAATAGTCGTATATGATCTTGAAAATATGGCCATTGGATGGACTGATTTCAATTGCTCTTCCAGCATTAAAGTGAAGGATGAAAAGACTGGATCTGTTTATACAGTGGGAGCACATGATATTTCTTCAGCTTCCACCGTGTTCATTGGAAGAATATTGACGTTCTTTTTGTTGCTTATTGCCATGCTATAA 1434 0.4086 MEHTGGLLVVLVLLVLLPLCFVNANLVLPVERKFKGPVSSLAAIKAHDARRHGRFLSAVDVPLGGDGAPTRTGLYYTRIRLGSPSKDYYVQVDTGSDILWVNCVGCTSCPKKSNLGMDLTLYDPNDSKTSNVIPCDDDFCTSIYDGQVSSCKKDSPCPYSITYGDGSTTGGSFIRDYLTFDRVDGNLHYTPENSSVVFGCGSKQSGTLTSSQGEALDGIIGFGQSNSSALSQLAASGKLKRVFSHCLDGINGGGIFSIGEVVAPKINTTPLVPRMAHYNVILKDLEVDGESIVLPTDIFGTGNGRETIIDSGTTLAYLPASVYDQILSKVLAQQPGMKLYTVEEQFTCFHYSNKIDDGFPVIKFHFEGLSLIAYPHDYLFPIKEGMQCLGLMKSNAQTKDGKDLMLLGDLVLSNKIVVYDLENMAIGWTDFNCSSSIKVKDEKTGSVYTVGAHDISSASTVFIGRILTFFLLLIAML* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00967 477 CDD pepsin_A_like_plant 75 433 IPR034161 -
Rops8g00967 477 ProSiteProfiles Peptidase family A1 domain profile. 75 429 IPR033121 -
Rops8g00967 477 SUPERFAMILY Acid proteases 70 437 IPR021109 -
Rops8g00967 477 Pfam Xylanase inhibitor C-terminal 277 429 IPR032799 -
Rops8g00967 477 Gene3D Acid Proteases 54 260 IPR021109 -
Rops8g00967 477 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Rops8g00967 477 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Rops8g00967 477 PRINTS Pepsin (A1) aspartic protease family signature 307 318 IPR001461 GO:0004190|GO:0006508
Rops8g00967 477 FunFam Eukaryotic aspartyl protease family protein 65 259 - -
Rops8g00967 477 Pfam Xylanase inhibitor N-terminal 75 259 IPR032861 -
Rops8g00967 477 Gene3D Acid Proteases 261 439 IPR021109 -
Rops8g00967 477 PANTHER ASPARTYL PROTEASES 10 427 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00967 Rops-Chr8 20736456 20742455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00967 57 434 Miscellaneous Gene Families AT1G44130 27.848 6.49e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00967 - - gmx:100779846 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00967 8 20736456 20742455 Rops8g00967 8 20736456 20742455 ECH