Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1612 ATGGCTACAGAAGGCTTTGTTGAGTCCTCTGATTTGTCTTTGAAGAGACAAAGAGATGAAGAAAAAAATGGAGTATCTGTTTCCATTAACACATTGGAGAGTGATAATATTCATAATGGTTTATCATCTGTTATTCCTGGTTGGTTTTCTGAAATTAGTCCAATGTGGCCTGGAGAGGCACACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGCAAGTCTGATTACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTATTCTCGATGGAGTCATTCAGCTCACAGAAAGGGATGAATGTGCTTATCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCCAAAAAGGTATTGGTTATCGGTGGAGGTGATGGAGGGGTCCTACGGGAAGTAGCACGCCATTCTTCAGTGGAAAAAATTGACATTTGCGAAATTGACAATATGGTTGTTGATGTCTCCAAACAATTTTTCCCCGATGTAGCCATAGGATTTGAGGATCCACGTGTGAACCTTCATATCGGCGACGGTATAATCAGCTACTCTAATTTTTTCCCTTACATATTGTATGACATTGATGCCTTTTCACTTGATGGTCTAGGAGTTGCATTTTTGAAGGAAGCTTTGGAAGGAACTTACGATGCAGTTATAGTGGATTCATCTGATCCGATCGGTCCTGCTCAAGAGCTTTTCGAAAAGCCCTTTTTCGAGGCGGTTGCTAAGGCTCTTCGTCCGGGAGGAGTTGTGTGTACTCAGGCAGAAAGTATATGGCTTCATATGGATATCATTGAGAACATTGTCGAAAATTGTCGTCAGACTTTTAAAGGCTCTGTTAACTATGCTTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTCATGCTTTGCTCAACCGATGGATCTCCTGTTGATTTCAAGCATCCGATAAATCCGATCGACGAAAAAGAGTTTCAGAAGGCAAGTAGACCATTGAAATTTTATAACTCCGAGATTCATACAGCAGCATTCTGTTTGCCATCTTTTGCAAAGCGAAAGATTGGTTCTAAAGCAACCTAA 1083 0.41 MATEGFVESSDLSLKRQRDEEKNGVSVSINTLESDNIHNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDNMVVDVSKQFFPDVAIGFEDPRVNLHIGDGIISYSNFFPYILYDIDAFSLDGLGVAFLKEALEGTYDAVIVDSSDPIGPAQELFEKPFFEAVAKALRPGGVVCTQAESIWLHMDIIENIVENCRQTFKGSVNYAWTTVPTYPSGMIGFMLCSTDGSPVDFKHPINPIDEKEFQKASRPLKFYNSEIHTAAFCLPSFAKRKIGSKAT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1612 360 Hamap Polyamine aminopropyltransferase [speE]. 47 356 IPR001045 GO:0003824
Lal16g1612 360 Gene3D Vaccinia Virus protein VP39 99 360 IPR029063 -
Lal16g1612 360 PANTHER SPERMIDINE SYNTHASE-RELATED 1 187 - -
Lal16g1612 360 PANTHER SPERMIDINE SYNTHASE-RELATED 206 359 - -
Lal16g1612 360 TIGRFAM speE: spermidine synthase 48 350 IPR001045 GO:0003824
Lal16g1612 360 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 125 138 IPR030373 -
Lal16g1612 360 Pfam Spermine/spermidine synthase domain 206 314 - -
Lal16g1612 360 Pfam Spermine/spermidine synthase domain 104 185 - -
Lal16g1612 360 PANTHER SPERMIDINE/SPERMINE SYNTHASE 206 359 IPR001045 GO:0003824
Lal16g1612 360 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 187 IPR001045 GO:0003824
Lal16g1612 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 44 355 IPR029063 -
Lal16g1612 360 PIRSF Spermidine_synth 36 199 IPR030668 GO:0006595
Lal16g1612 360 PIRSF Spermidine_synth 189 360 IPR030668 GO:0006595
Lal16g1612 360 CDD AdoMet_MTases 124 259 - -
Lal16g1612 360 Gene3D Spermidine synthase, tetramerisation domain 40 98 IPR037163 -
Lal16g1612 360 Pfam Spermidine synthase tetramerisation domain 47 101 IPR035246 -
Lal16g1612 360 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 46 307 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1612 Lal-Chr16 14455852 14460358 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1612 K00797 - gmx:100776863 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1612 16 14455852 14460358 Lal16g1612 16 14455852 14460358 ECH