Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01459 ATGGATCTTAGAGGAAGATTGGCGTTTTTCCTTGTGGGGTTGTTTGTTTTGCAACTTTGTTGTGTCGCCAATGCCAAACTGGTTTTCCCTGTTGAACGCAAATTCAAAGGCGCCGTTGAAAACCTCGCTGCTATCAAAGATCATGATGCTCGTCGCCGAGGAAGGTTTCTCTCTGTCGTTGATATCCCTCTCGGCGGCAATGGTCGTGCCAATTCAAATGGGTTATATTATACCAAAATTGGGCTTGGCTCTCCTGTGAAGGAGTACTATGTGCAAGTTGATACGGGGAGTGACATTCTGTGGGTGAATTGTGTTGGCTGCACAACATGTCCCAAGAAAAGTGGTCTTGGTATGGAGTTAACCCTCTACGACCCTGATCAATCCAAAACTTCAACTATGATTGGTTGTGAGGATGACTTCTGCACTTCCACATATGATGGTCCTATTTCTGGCTGCACAAAAGACATGTCCTGCCCATACAGCATAACTTATGGAGATGGAAGTACGACCACTGGGTCCTATGTCCAGGATTATCTTACATTCGACCGAGCCAATGCTGATCTCAGTACTGTACTGGATAATAGCACTGTGGTTTTCGGGTGTGGAGCTAGACAATCCGGGACATTGAGTTCAGGTTCTGATGAATCCCTTGATGGAATAATTGGTTTAGGACAAGCAAATTCGTCTGTGCTTTCGCAGCTTGCTGCAGCTGGAAAGGTGAAAAGGGTATTTTCACACTGCCTTGACAGTTTTAATGGAGGAGGAATATTTTCCATTGGGGAAGTAGTGGAGCCAAAATTTAAGAAAACTTCATTGGTACCAAAAATGGCACACTACAATGTGATTTTGAAGGACTTGGAGGTTGGTGGGGACAGTGTACAACTCCCCACAGATATATTTGATTCTTCAAGTGGGAGGGGAACAATTATAGACAGTGGTACAACCCTGGCTTATCTTCCATCCTCAGTTTATGAGCAGATATTGGAGAAGGTTTTGGCTCAACAGTCTGGACTGAAATTATATCTTGTTGAAGAGCAATTCACATGTTTCCGTTTTGATGATAATGTTGACAAGGGATTTCCAACTGTCAAATTTACCTTCGAGGAGGGGCTTACTCTGACAGCTTATCCTCATGATTACCTATTCCTTTTCAAAGAAAACATGTGGTGTGTTGGCTGGCAAAAAAGTATGGCACAAACTAAGGATGGACAGGAAATAATTCTTCTAGGAGATTTGGTGCTGTCAAACAAATTAGTTGTATATGATCTTGAAAACATGACCATTGGATGGACTGATTACAATTGCTCTGACAGCATCAAAGTGAAGGATGATAAGACTGGAAATGTATATGAAGTGGGCTCACACGATCTTTCTTCAGCTTCCACCGTGTTAGTAGGAAGTGTATTAACGCTGTTAATGATGCTTATTACAATGCTAAGCACATAA 1446 0.4253 MDLRGRLAFFLVGLFVLQLCCVANAKLVFPVERKFKGAVENLAAIKDHDARRRGRFLSVVDIPLGGNGRANSNGLYYTKIGLGSPVKEYYVQVDTGSDILWVNCVGCTTCPKKSGLGMELTLYDPDQSKTSTMIGCEDDFCTSTYDGPISGCTKDMSCPYSITYGDGSTTTGSYVQDYLTFDRANADLSTVLDNSTVVFGCGARQSGTLSSGSDESLDGIIGLGQANSSVLSQLAAAGKVKRVFSHCLDSFNGGGIFSIGEVVEPKFKKTSLVPKMAHYNVILKDLEVGGDSVQLPTDIFDSSSGRGTIIDSGTTLAYLPSSVYEQILEKVLAQQSGLKLYLVEEQFTCFRFDDNVDKGFPTVKFTFEEGLTLTAYPHDYLFLFKENMWCVGWQKSMAQTKDGQEIILLGDLVLSNKLVVYDLENMTIGWTDYNCSDSIKVKDDKTGNVYEVGSHDLSSASTVLVGSVLTLLMMLITMLST* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01459 481 PRINTS Pepsin (A1) aspartic protease family signature 82 102 IPR001461 GO:0004190|GO:0006508
Lapu1g01459 481 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Lapu1g01459 481 PRINTS Pepsin (A1) aspartic protease family signature 407 422 IPR001461 GO:0004190|GO:0006508
Lapu1g01459 481 Pfam Xylanase inhibitor N-terminal 76 260 IPR032861 -
Lapu1g01459 481 Pfam Xylanase inhibitor C-terminal 278 431 IPR032799 -
Lapu1g01459 481 Gene3D Acid Proteases 63 261 IPR021109 -
Lapu1g01459 481 Gene3D Acid Proteases 262 441 IPR021109 -
Lapu1g01459 481 SUPERFAMILY Acid proteases 70 439 IPR021109 -
Lapu1g01459 481 FunFam Eukaryotic aspartyl protease family protein 66 260 - -
Lapu1g01459 481 PANTHER ASPARTYL PROTEASES 19 429 IPR001461 GO:0004190|GO:0006508
Lapu1g01459 481 CDD pepsin_A_like_plant 76 435 IPR034161 -
Lapu1g01459 481 ProSiteProfiles Peptidase family A1 domain profile. 76 431 IPR033121 -
Lapu1g01459 481 FunFam Eukaryotic aspartyl protease family protein 261 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01459 Lapu-Chr1 27408477 27413323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01459 44 435 Miscellaneous Gene Families AT1G77480 27.119 1.11e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01459 - - gmx:100792305 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01459 1 27408477 27413323 Lapu1g01459 1 27408477 27413323 ECH