Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01168 ATGGCGCTGTTGTGTCTCACTCTCAGCGCAAACCCTGCTTCAATTGTCTGCAAATGCAATGCCTCCCTTCCCACCGCACCCCAGGCGCTTGACGCTACCTACATCCGACGCGCCGCCCACCTTGCCGACAAATCCGCCGGTTTCTCTTCCCCCCACCCCAACTTCGGCTGTGTCATCCTCTCCCCCGCAGGCCACGTCGCCGGTGAGGGCTACCTCTACGCTCAGGGCACCGCCTCCGCGGAGGTTCAGGCCGTCGAATCCGCCGGCGAACGCTGTCGCGGTGCCACGGCGTACCTGAACATGGAGCCCGGCGACTGCCACGGCGACCACAGTGCCGTGTCTGCTCTGCTCCAGGTTCTTCTTCGCCTTTCTTCTGTTTGTTACCTAACCCGCATGTCTGTGTTACAATCCGATGTTGATGTTGATGTTTTTGTTGCTCACGAATACGATGGAGGGGTCAGAAGGGTTGTGATTGGAATGAGGCATCCCCTGCAACATCTTCGTGGCAATGCTGTGCGTGCACTCAGAAATGAAGGACTGAATGTTGATATTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCATCGCATGTTCCCTTTTCTGTTCTCAAGTATGCTATGACTCTTGATGGAAAAATTGCTGCTAGCAGTGGCCATGCGTCATGGATAAGCAGCAAGCAGTCTAGAAATCTAGTGTTTGAGCTACGGGGTAGAAGTGATGCTGTTATTGTGGGGGGAAATACGGTTCGAAGAGACAATCCAAGACTAACAGCCAGACATGGTGGGGGCCATATGCCAATGCGAATTGTGATGACCCAGACTCTTGATCTTCCAGAGGAAGCAAACCTGTGGGACATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGGAGGAGTTTCCAGAAGCTGCTTGCATCTAAAGGAGTTGAGGTTGTGGAGTTTGACATCTTGACTCCCCGAGAAGTTATGGAGTATTTCCACGATCGTGGTTATCTTTCAATTTTATGGGAATGTGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAGGAATGCACCATCTCCTGTGGGTGATCTTGGGATGGTTGAGATGACACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGACCTGACATGCTTATCAGTGGATTTCTTCAGCCCTTACCAGACATGATACCTGTAATCCCATCACGTGATGAAACTTTTGTTGTTGATCCTACTGTTTCACCATACGAGTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTACGGTGCATTGTCAAATTTCTCTCCTCATCCCATTCAAATGCATGATGAAAATGGTGATTATGTGACTTGGTTGAGTGTTGAACATTACTACCAGGCACACAAGTTTGTTGGGGTGGATGATCCCATGGCACAAGATTGTGTTGAAAGGATTAAATCTGCAATAAGTCCGGAAGAAGCTGCAAGAATAGGACGGTCAATGCAAAAGCAGAAACCTGATCTGATAAGGTCTGACTGGGAGAACACAAAGATCGACGTGATGTACAAGGCATTGAAATCCAAGTTCTCAACCTACCCGCATTTGAAAACTATGCTGCTATCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCACCACATGATCTGTTTTGGGGTGGAGGCCGAGAGGGAGAAGGCTTAAATTATCTTGGCAGACTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGATTCATCATCACCTAGTTTAACTGTGTAA 1869 0.4762 MALLCLTLSANPASIVCKCNASLPTAPQALDATYIRRAAHLADKSAGFSSPHPNFGCVILSPAGHVAGEGYLYAQGTASAEVQAVESAGERCRGATAYLNMEPGDCHGDHSAVSALLQVLLRLSSVCYLTRMSVLQSDVDVDVFVAHEYDGGVRRVVIGMRHPLQHLRGNAVRALRNEGLNVDILGEDLTSNLIEDAQKECLLVNAPLICRAASHVPFSVLKYAMTLDGKIAASSGHASWISSKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLDLPEEANLWDMSEVSTIVVTQRGARRSFQKLLASKGVEVVEFDILTPREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIGGRNAPSPVGDLGMVEMTQALNLIDVCYEQVGPDMLISGFLQPLPDMIPVIPSRDETFVVDPTVSPYESRIIFFYKTWDPYGALSNFSPHPIQMHDENGDYVTWLSVEHYYQAHKFVGVDDPMAQDCVERIKSAISPEEAARIGRSMQKQKPDLIRSDWENTKIDVMYKALKSKFSTYPHLKTMLLSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMKLRSEFLGDSSSPSLTV 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01168 622 NCBIfam riboflavin-specific deaminase C-terminal domain 216 422 IPR011549 GO:0008703|GO:0009231|GO:0050661
Spst1g01168 622 Gene3D - 448 615 IPR037238 -
Spst1g01168 622 NCBIfam conserved hypothetical protein 457 610 IPR012816 -
Spst1g01168 622 FunFam Swarming motility protein ybiA 450 615 - -
Spst1g01168 622 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 151 421 IPR004794 GO:0008835|GO:0009231
Spst1g01168 622 SUPERFAMILY Dihydrofolate reductase-like 216 423 IPR024072 -
Spst1g01168 622 SUPERFAMILY Cytidine deaminase-like 31 111 IPR016193 GO:0003824
Spst1g01168 622 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 138 IPR002125 -
Spst1g01168 622 PANTHER DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) 211 427 - -
Spst1g01168 622 Pfam NADAR domain 458 611 IPR012816 -
Spst1g01168 622 CDD NADAR 456 609 IPR012816 -
Spst1g01168 622 Gene3D Dihydrofolate Reductase, subunit A 209 425 IPR024072 -
Spst1g01168 622 SUPERFAMILY YbiA-like 444 613 IPR037238 -
Spst1g01168 622 Pfam RibD C-terminal domain 219 421 IPR002734 GO:0008703|GO:0009231
Spst1g01168 622 Gene3D Cytidine Deaminase, domain 2 24 191 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01168 K11752 - gmx:100801283 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01168 1 14024986 14029373 Spst1g01168 1 14024986 14029373 ECH