Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03245 ATGGATCtgagatttttgtttataattgttTTGGAAATTCTGTGTGTTGCAATTGCGAATGGGAATGGAAATGATTTAGTGTTTCAGGTGGAGCGTAGGAAAACGAGTTTGAGTGGAATTAAAGATCATGATGATCATCGTCGTGGTAGATTTCTTTCAGCTGTTGATATCAACCTTGGTGGTAATGGTCTTCCAACTAAAACCGGGTTGTATTTCACAAAACTTGGGCTTGGTTCCCCAAAGAAGGACTACTATGTTCAAGTTGATACAGGAAGTGATCTTATGTGGGTGAATTGTATTGAGTGCTCAAAATGTCCCAGGAAAAGCGATATCGGTATGGACTTGACTCTCTATGACCCAAAGGGATCTCATACTTCAGAGTTAATTTCTTGTGACCAAGATTTTTGCGCTTCCACATTTGATGGTCCGATTCTTGGTTGCAAGGCTGAAATACCCTGCCCTTATACCATAACTTATGGAGATGGAAGTGCAACTACTGGATACTATGTCAGGGATTATCTTACTTTTGACTCTGTCAGTGGAAATCTCCATACTGCACCGCAAAATAGCAGCATTATTTTTGGGTGTGGCGCAGTACAATCTATGGGTTCATCTAATGAAGGAGCCCTTGATGGAATAATTGGTTTTGGACAAGCAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCACGAAaggtgaaaaaaatattttcacacTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAATTGGTGGAACCAAAAGTCAGTACAACTCCATTGGTACCAAATATGTCACATTTCAATGTGGTTTTGAAGAACATTGAAGTTGATGGTGATGTTCTACAGCTTCCCTCAGATATATTTGATTCTGGAAATGGGAAGGGGACAAttattgatagtggaacaaCCTTGGCTTATCTTCCTATCATAGTTTATGACGAACTAATGTCAAGGATTTTTGCCCGGCAGCCTGGATTGAAATTAGAGCTTGTTGATCAACAATTTAAATGTTTTCATTATGCTGGAAATGTTGATGATGCATTTCCAGTTGTCAAGCTACATTTTGAGGACTCCCTTTCTCTGACAGTTTATCCTCATGAGTACATGTTCTCATATAACGATGGTGCGCGGTGCATTGGCTGGCAGAAAAGTGTGCCACAAACTAAGGACGGAAAGGACATGACACTTCTTGGAGATTTAGTACTATCAAACAAACTAGTCTTGTATGATCTTGAAAATATGGTCATTGGGTGGACTGACTACAATTGCTCTTCCAGCATTAAAGTTAAGGATTCAACGACTGGAATTGTACATACAGTGGGTGCACACAATCTTTCTCCAGCTTCTACCTTTCTAAATGGTAGAACATTGACATTCTTTTTGCTGCTAACTGTCATGCTAAACTGTTTTTCTAACTAA 1434 0.3842 MDLRFLFIIVLEILCVAIANGNGNDLVFQVERRKTSLSGIKDHDDHRRGRFLSAVDINLGGNGLPTKTGLYFTKLGLGSPKKDYYVQVDTGSDLMWVNCIECSKCPRKSDIGMDLTLYDPKGSHTSELISCDQDFCASTFDGPILGCKAEIPCPYTITYGDGSATTGYYVRDYLTFDSVSGNLHTAPQNSSIIFGCGAVQSMGSSNEGALDGIIGFGQANSSVLSQLAASRKVKKIFSHCLDNIRGGGIFAIGELVEPKVSTTPLVPNMSHFNVVLKNIEVDGDVLQLPSDIFDSGNGKGTIIDSGTTLAYLPIIVYDELMSRIFARQPGLKLELVDQQFKCFHYAGNVDDAFPVVKLHFEDSLSLTVYPHEYMFSYNDGARCIGWQKSVPQTKDGKDMTLLGDLVLSNKLVLYDLENMVIGWTDYNCSSSIKVKDSTTGIVHTVGAHNLSPASTFLNGRTLTFFLLLTVMLNCFSN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03245 477 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 445 - -
Tsu01g03245 477 Pfam Xylanase inhibitor C-terminal 273 424 IPR032799 -
Tsu01g03245 477 Gene3D Acid Proteases 255 434 IPR021109 -
Tsu01g03245 477 SUPERFAMILY Acid proteases 65 432 IPR021109 -
Tsu01g03245 477 Gene3D Acid Proteases 62 254 IPR021109 -
Tsu01g03245 477 ProSiteProfiles Peptidase family A1 domain profile. 71 424 IPR033121 -
Tsu01g03245 477 Pfam Xylanase inhibitor N-terminal 71 253 IPR032861 -
Tsu01g03245 477 PRINTS Pepsin (A1) aspartic protease family signature 400 415 IPR001461 GO:0004190|GO:0006508
Tsu01g03245 477 PRINTS Pepsin (A1) aspartic protease family signature 77 97 IPR001461 GO:0004190|GO:0006508
Tsu01g03245 477 PRINTS Pepsin (A1) aspartic protease family signature 301 312 IPR001461 GO:0004190|GO:0006508
Tsu01g03245 477 PANTHER ASPARTYL PROTEASES 9 445 IPR001461 GO:0004190|GO:0006508
Tsu01g03245 477 CDD pepsin_A_like_plant 71 428 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03245 Tsu-Chr1 40235653 40242539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03245 53 429 Miscellaneous Gene Families AT1G44130 26.031 4.78e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03245 - - gmx:100804123 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03245 01 40235653 40242539 Tsu01g03245 01 40235653 40242539 ECH