Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01173 ATGGATCTCAGAAGAGAAAGATTGGTGATTTTCCTTGTGGGGTTGTTTGTTTTGCAAGTTTGCTGTGTCGCCAATGCCAATATGGTTTTCCCTGTTGAACGCAAATTCAAAGGCCCCGTTGAAAGCCTCGCTGCTATCAAAGATCATGATGCCCAGCGCCGAGGAAGGATTCTCTCTGTCGCTGATATCCCTCTTGGTGGCAATGGCCGTGCCAATGCAAATGGGCTGTATTACACCAAAATTGGGCTTGGCTCTCCTCCGAAGGACTTCTATGTACAAGTTGACACAGGGAGTGACGTTCTGTGGGTGAATTGTGTTGGTTGCACAACCTGTCCCAAGAAAAGTGGTCTTGGTATGGACTTAACCCTCTATGACCCTCAGCTATCCGACACTTCATATGTGATAGGTTGTGACCATGAGTTTTGCACTTCCACATATGAGGGTCCTATTTCTGGCTGCACAAAAGAGATGTCCTGCCCATACAGCATAACTTATGGAGATGGAAGTACGACCACTGGATCCTATATTCAGGATTATCTTACATTCGACCGGGCTAATGGTGATCACCGTACCGTACCGGATAATAGCTCTGTGATTTTTGGGTGTGGAGCTAGACAATCTGGGACATTGAGTTCAGGTTCTGATGAATCCCTTGATGGAATAATTGGTTTAGGACAATCAAATTCTTCTGTGCTTTCACAGCTTGCTGCAGCTGGAAAGGTGAAAAGGGTATTCTCACACTGCCTTGACAGTAATAATGGAGGAGGAATATTTGCAATAGGGGAAGTAGTGCAGCCAAAATATAAGACAACTCCATTGGTACCGAAAATGGCACACTACAATGTGATTTTGAAGGACTTGGAGGTCGGTGGGGACAGTGTGCAACTCCCCACAGATATATTTGATTCTACAAATGGGAGGGGAACAATTATCGATAGTGGTACAACCTTGGCTTATCTTCCATCTTCAGTTTATGACCAGATATTGGAGAAGGTTTTGGCTCAGCAGTCTGGAATGAAATTATATCTTGTTGAGGATCAATTTACATGTTTCCGTTTTGATGATAATATTGATAAGGGATTTCCAATTGTCAAGTTTACCTTCGAGGAGGGGCTTACTCTGACAACTTATCCTCAAGATTACCTATTCCTGTTTAAAGAAAACATGTGGTGTGTTGGCTGGCAAAAAAGTATGGCACAAACCAAGGATGGACAGGACATAATTCTTCTTGGAGATTTGGTGCTGTCAAACAAATTAGTCGTATATGATCTTGAAAACATGACCATTGGATGGGCTGAGTACAATTGCTCTACCAGCATCAAAGTGAAGGATGATAAGACTGGAAGTGTATATACAGTGGGCGCACACAATATTTCTTCAGCTTCCACCATGTTAATTGGAAGTGTATTAACGTTCTTATTCATGCTTGTTACAATGCTGAGCACTTAA 1449 0.4286 MDLRRERLVIFLVGLFVLQVCCVANANMVFPVERKFKGPVESLAAIKDHDAQRRGRILSVADIPLGGNGRANANGLYYTKIGLGSPPKDFYVQVDTGSDVLWVNCVGCTTCPKKSGLGMDLTLYDPQLSDTSYVIGCDHEFCTSTYEGPISGCTKEMSCPYSITYGDGSTTTGSYIQDYLTFDRANGDHRTVPDNSSVIFGCGARQSGTLSSGSDESLDGIIGLGQSNSSVLSQLAAAGKVKRVFSHCLDSNNGGGIFAIGEVVQPKYKTTPLVPKMAHYNVILKDLEVGGDSVQLPTDIFDSTNGRGTIIDSGTTLAYLPSSVYDQILEKVLAQQSGMKLYLVEDQFTCFRFDDNIDKGFPIVKFTFEEGLTLTTYPQDYLFLFKENMWCVGWQKSMAQTKDGQDIILLGDLVLSNKLVVYDLENMTIGWAEYNCSTSIKVKDDKTGSVYTVGAHNISSASTMLIGSVLTFLFMLVTMLST 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01173 482 Gene3D Acid Proteases 66 260 IPR021109 -
Spst1g01173 482 CDD pepsin_A_like_plant 77 436 IPR034161 -
Spst1g01173 482 Pfam Xylanase inhibitor C-terminal 279 432 IPR032799 -
Spst1g01173 482 SUPERFAMILY Acid proteases 72 440 IPR021109 -
Spst1g01173 482 FunFam Aspartyl protease family protein 263 441 - -
Spst1g01173 482 ProSiteProfiles Peptidase family A1 domain profile. 77 432 IPR033121 -
Spst1g01173 482 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Spst1g01173 482 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Spst1g01173 482 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Spst1g01173 482 Pfam Xylanase inhibitor N-terminal 77 261 IPR032861 -
Spst1g01173 482 Gene3D Acid Proteases 261 443 IPR021109 -
Spst1g01173 482 PANTHER ASPARTYL PROTEASES 16 430 IPR001461 GO:0004190|GO:0006508
Spst1g01173 482 FunFam Eukaryotic aspartyl protease family protein 67 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01173 Spst-Chr1 14057784 14062746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01173 41 436 Miscellaneous Gene Families AT1G77480 26.747 1.44e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01173 - - gmx:100792305 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01173 1 14057784 14062746 Spst1g01173 1 14057784 14062746 ECH