Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00519 ATGGATCTTCAAGAAAGATTGGTGTTTTTCCTCGTGGGATTGTTTCTTTTGCAACTTTTTTGTGTTGCCAATGCCAATTTGGTTTTCCCTGTTGAAAGCAAATTCAAAGGCTCCGTTGAAAACCTTGCTGCTATCAAAGATCATGATGCTCAGCGCCGAGGGAGGTTTCTCTCTGCCGTTGATATCCCTCTCGGTGGCAATGGTCGTGCCAATTCAAATGGACTGTATTATACAAAAATTGGGCTTGGCTCTCCCGCGAAGGACTACTATGTGCAGGTTGATACAGGAAGTGACCTTCTGTGGGTGAATTGTGTTGGCTGCACAACATGTCCCAGGAAAAGTGGTCTTGGTATGGACTTAACCCTCTACGACCCTGCACAATCCACAGCTTCAACTTTGGTTGGTTGTGACGATAAATTTTGCACTTCCACATATAATGGTCCTATTTCTGGCTGCTCAAGAGACATGGCTTGTCCGTACAGCATAACTTATGGAGATGGAAGTACAACCACTGGGTCCTATATTAAGGATTATATTACATTCAACCGAGCCAATGGTGATCTCAAGACTGTACCAGATAATAGCACTGTTATTTTTGGGTGTGGAGCTAAACAATCTGGGACACTGAGTTCAGGTTCTGAGGAATCCCTTGATGGAATAATTGGTTTAGGACAATCAAATGCGTCTGTGCTTTCACAACTTGCTGCAGCTGGAAAGGTGAAAAGGGTATTTTCCCACTGTCTTGACAGTTATAATGGAGGAGGAGTATTTGCCATAGGGGAAGTAGTGCAGCCAAAATTTAACAAAACTTCATTGGTACAAAAAATGGCACACTACAATGTGAATTTGAAGGACTTGGAGGTTGGTGGGGATAGTGTACAACTCCCCACAGATATATTTGATTTTTCAAATGGGAGGCAAGCAATTATAGATAGTGGTACAACCCTGGCTTATCTTCCATCCACAGTTTATGATCAAATATTAGAGAAGGTTTTGGCTGCACAGCCTGGAATGAAATTATATCTTGTTGAAGAACAATTTACATGTTTCCGTTTTGATGATAATGTTGATGATGGATTTCCAATTGTCAAGTTTACCTTTGATGACGGACTAACTCTGACAACTTATCCTCATGATTACCTATTCCTGTTTAAAGAGAACATGTGGTGTGTTGGCTGGCAAAAAAGTATTGCACAAACTAAGGATGGACAGGAGATAATTCTTCTTGGAGATTTGGTGCTGTCAAACAAGTTAGTTGTATATGATCTTGAAAACATGACCATTGGATGGACTGACCACAATTGCTCTACCAGCATCAAAGTGAAGGATGATGAAACTGGAAAGGTATATGCAGTGAGCGCACATGATCTTTCTTCAGCTTCCACCGTGATAATTGGAAGTGTATTAACGCTCTTAATGATGCTTATTACAATGCTAAGCTCTTAA 1446 0.4101 MDLQERLVFFLVGLFLLQLFCVANANLVFPVESKFKGSVENLAAIKDHDAQRRGRFLSAVDIPLGGNGRANSNGLYYTKIGLGSPAKDYYVQVDTGSDLLWVNCVGCTTCPRKSGLGMDLTLYDPAQSTASTLVGCDDKFCTSTYNGPISGCSRDMACPYSITYGDGSTTTGSYIKDYITFNRANGDLKTVPDNSTVIFGCGAKQSGTLSSGSEESLDGIIGLGQSNASVLSQLAAAGKVKRVFSHCLDSYNGGGVFAIGEVVQPKFNKTSLVQKMAHYNVNLKDLEVGGDSVQLPTDIFDFSNGRQAIIDSGTTLAYLPSTVYDQILEKVLAAQPGMKLYLVEEQFTCFRFDDNVDDGFPIVKFTFDDGLTLTTYPHDYLFLFKENMWCVGWQKSIAQTKDGQEIILLGDLVLSNKLVVYDLENMTIGWTDHNCSTSIKVKDDETGKVYAVSAHDLSSASTVIIGSVLTLLMMLITMLSS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00519 481 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Vian2g00519 481 PRINTS Pepsin (A1) aspartic protease family signature 82 102 IPR001461 GO:0004190|GO:0006508
Vian2g00519 481 PRINTS Pepsin (A1) aspartic protease family signature 407 422 IPR001461 GO:0004190|GO:0006508
Vian2g00519 481 Gene3D Acid Proteases 262 441 IPR021109 -
Vian2g00519 481 ProSiteProfiles Peptidase family A1 domain profile. 76 431 IPR033121 -
Vian2g00519 481 Pfam Xylanase inhibitor N-terminal 76 260 IPR032861 -
Vian2g00519 481 SUPERFAMILY Acid proteases 70 439 IPR021109 -
Vian2g00519 481 PANTHER ASPARTYL PROTEASES 16 429 IPR001461 GO:0004190|GO:0006508
Vian2g00519 481 Pfam Xylanase inhibitor C-terminal 278 431 IPR032799 -
Vian2g00519 481 Gene3D Acid Proteases 58 261 IPR021109 -
Vian2g00519 481 CDD pepsin_A_like_plant 76 435 IPR034161 -
Vian2g00519 481 FunFam Eukaryotic aspartyl protease family protein 66 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00519 Vian-Chr2 6265426 6270082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00519 58 436 Miscellaneous Gene Families AT1G44130 26.750 7.97e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00519 - - gmx:100792305 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00519 2 6265426 6270082 Vian2g00519 2 6265426 6270082 ECH