Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1244 ATGGATCTGAGATTATTTTTATTCATAATACTAGCTTCGGAAATTCTCAGTGTTGTTGCGAATGGAAATGATTTAGTGTTTCAAGTGGAGCGTCGAAAAACGAGTTTAGGTGGAATTAAACATCACGATGATCGTCGTCGTGGTAGATTTCTTTCAGCTGTCGATGTCGATCTTGGCGGCAACGGTCTCCCTACTGCAACCGGGCTGTATTTCACTAAACTCGGGCTTGGCTCTCCAAAGAAGGACTACTATGTCCAAGTTGATACAGGAAGTGATATTCTGTGGGTGAATTGTGTTGAGTGCTCAAGATGTCCTAGGAAAAGCCGAATCGGTATGGACCTGACTCTCTATGACCCAAAGGGATCTCATACTTCGGAGTTAATTTCCTGTGACCATCATTTTTGCTCTTCCACATATGATGGTCCAATTCCCGGTTGCAAGGCTGAAACACCCTGCCCTTATAGCGTAACTTATGGAGATGGAAGTGCAACTACTGGATACTATATCAGGGATTATCTTACTTTTGACAATGTCAATGGAAATCTCCATACCGCACCGCAAAATAGCAGCATCATTTTTGGGTGTGGTGCTGTACAATCTGGCTCATTGGGTTCATCTTCTGAAGAAGCCCTTGATGGAATAATTGGTTTTGGACAAGCAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCTCGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACACTATTCGTGGTGGTGGAATATTTGCCATAGGGGAATTGGTGGAACCAAAAGTCAGTACAACTCCATTGGTACCAAATATGGCACATTACAATGTGGTTTTGAAGAATATTGAAGTTGATGGTGATGTTCTACAGCTTCCCTCGGATATATTTGATTCTGGAAATGGGAAGGGGACAGTGATTGATAGTGGAACAACCTTGGCTTATCTTCCTGGCATAGTTTATGACCAACTACTTCCAAAGGTTTTGGCCCGGCAGCCTGGATTGAAATTAGGTCTTGTTGAGGAACAATTTAAATGTTTTCCGTATGCTGGAAATGTTGATGGTGTATTTCCAGTTGTCAAACTACATTTTGAGGATTCTCTTTCTCTGACAGTTTATCCTCATGACTACCTGTTCCCATATAAGGAAGGTGGCCGGTCACTCCGGTGTATTGGCTGGCAGAAAAGTGTGACACAAACTAAGGATGGAAAGGACATGACACTTCTTGGAGATTTGGTGTTATCAAACAAACTTGTCTTATATGATCTCGAGAATATGGCCATTGGATGGACTGAATATAATTGCTCTTCCAGCATTAAAGTGAAGGATGCAACGACTGGAATAGTACATACAGTGGGTGCACACAATATTGCTTCAGCTTCTACCTTTTTAATCGGTAGAATATTGACATTCTTTTTGTTGCTAACTTCCATGCTAAACTGTTTTTTCAACTAG 1446 0.4142 MDLRLFLFIILASEILSVVANGNDLVFQVERRKTSLGGIKHHDDRRRGRFLSAVDVDLGGNGLPTATGLYFTKLGLGSPKKDYYVQVDTGSDILWVNCVECSRCPRKSRIGMDLTLYDPKGSHTSELISCDHHFCSSTYDGPIPGCKAETPCPYSVTYGDGSATTGYYIRDYLTFDNVNGNLHTAPQNSSIIFGCGAVQSGSLGSSSEEALDGIIGFGQANSSVLSQLAASRKVKKIFSHCLDTIRGGGIFAIGELVEPKVSTTPLVPNMAHYNVVLKNIEVDGDVLQLPSDIFDSGNGKGTVIDSGTTLAYLPGIVYDQLLPKVLARQPGLKLGLVEEQFKCFPYAGNVDGVFPVVKLHFEDSLSLTVYPHDYLFPYKEGGRSLRCIGWQKSVTQTKDGKDMTLLGDLVLSNKLVLYDLENMAIGWTEYNCSSSIKVKDATTGIVHTVGAHNIASASTFLIGRILTFFLLLTSMLNCFFN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1244 481 PRINTS Pepsin (A1) aspartic protease family signature 404 419 IPR001461 GO:0004190|GO:0006508
Mal1g1244 481 PRINTS Pepsin (A1) aspartic protease family signature 302 313 IPR001461 GO:0004190|GO:0006508
Mal1g1244 481 PRINTS Pepsin (A1) aspartic protease family signature 76 96 IPR001461 GO:0004190|GO:0006508
Mal1g1244 481 Pfam Xylanase inhibitor C-terminal 272 428 IPR032799 -
Mal1g1244 481 ProSiteProfiles Peptidase family A1 domain profile. 70 428 IPR033121 -
Mal1g1244 481 SUPERFAMILY Acid proteases 64 436 IPR021109 -
Mal1g1244 481 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 32 449 - -
Mal1g1244 481 PANTHER ASPARTYL PROTEASES 32 449 IPR001461 GO:0004190|GO:0006508
Mal1g1244 481 Pfam Xylanase inhibitor N-terminal 70 254 IPR032861 -
Mal1g1244 481 CDD pepsin_A_like_plant 70 432 IPR034161 -
Mal1g1244 481 Gene3D Acid Proteases 61 255 IPR021109 -
Mal1g1244 481 Gene3D Acid Proteases 256 438 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1244 Mal-Chr1 15735320 15743106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1244 52 433 Miscellaneous Gene Families AT1G44130 25.313 5.56e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1244 - - gmx:100804123 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1244 1 15735320 15743106 Mal1g1244 1 15735320 15743106 ECH