Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3008 ATGATGGCGCTATCGTGTTTCACCCCCATCATCGCGAAACCTCCTTCATCCATTATCTGCAAATGCACCAAACCCTCCACCAACCACGCGCTCGACGCCGCGTACATCAAACGCGCCGCCCTCATCGCCGACAAATCCGCCGGTTTCACTGCACCCCACCCCAACTTCGGCTGCGTCATCGCCACCCCTTCCGGTGATGTCGCCGGCGAGGGATACCTCTACGCGGAGGGAACCACTCCTGCCGAGGTGCAGGCCGTCACCGCCGCCGGAGAGCGATGTCGCGGCGCCACTGCTTACCTCAACATGGAACCCGGCGACTGCCACGCTGACAGTGCTGCTGTGTCTGCTCTGCTTCAGGGAGGGGTGAAGAGAGTTGTCATTGGAATGAGGCATCCATTGCAGCATCATCGGGGCAATGCCGTGCGTGCACTCAGAGGTGAAGGACTGCAAGTTGATCTTCTTGGAGAGGATCTCACTAGTAAGCTTGTTGAGGATGCCCAGAAAGAATGTCTTCTTGTCAATGCCCCTTTGATTTGTAGAGCTACTTCGCGCATTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTAGCTCTGGCCATGCATCATGGATAAGCAGCAAAGAATCTAGAAATCTAGTTTTTGATCTGCGAGGTAGAAGTGATGCGGTTATTGTGGGAGGAAATACAGTTCGAAAGGACAATCCAAGACTGACTGTCAGACACGGAGGTGGGCGTATGCCTGTTCGCATTGTAATGTCCCAGACTCTCAATCTTCCAGATGAAGCGCATCTATGGGACACTTCTGAGGTTTCTACCATGGTTGTAACACAGAGGGGTGCAAGGAGGAGTTTCCAGAAGCTGCTTGCATCTAAAGGAGTTGAAGTAGTGGAGTTTGACATGTTAAATTCCCAAGATGTTATGGAGTACTTTCATGATCGTGGGTATCTTTCAATTTTATGGGAATGTGGAGGAACATTGGCTGCCTCTGCTATTTCATCCGGAGTAATTCACAAGGTTTTTGCATTTATTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCTCCCGTGGGTGAACTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTCGCTATGAACAGGTTGGTCCTGACATGCTTGTTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACTGGAGGAAACTTTTGTTGTTGATCCTACTATCTCGCGATACGAGTCTAGCATCATATTTTTCTATAAAACATGGGATCCTTACGGTGCATTTTCAAATTTCTCTCCTCATGCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGTCAAGTGTGGAGCATTTTTACCAGGCACACAAGTTTGTTGGGGCGGATGATGCTTGTGCAGATTGTGTTGAAAGGATTAAATCTGCAAAAAGTCCAGAAGAGGCTGCAAAAATAGGAAGGTCAATGCAAAGGAAACGTCCAGATCTGGTAAGGCCTGGCTGGGACAACATGAAGATTGATGTCATGTACAGAGCACTGAAATGCAAGTTCTCAATGTACCCACATTTGAAATCGATGCTGCTTGCAACTGCTGGTTGTGTTCTAGTTGAGGCTTCACCACATGATCTGTTCTGGGGTGGGGGGCGACAGGGAGATGGCTTAAATTATCTTGGCCAACTGTTGATGAAATTGAGATCAGAGTTTCTTGGAGAATCTTCATCAAGTGAGGCCCCTAGTTTAACTGTATAG 1782 0.4781 MMALSCFTPIIAKPPSSIICKCTKPSTNHALDAAYIKRAALIADKSAGFTAPHPNFGCVIATPSGDVAGEGYLYAEGTTPAEVQAVTAAGERCRGATAYLNMEPGDCHADSAAVSALLQGGVKRVVIGMRHPLQHHRGNAVRALRGEGLQVDLLGEDLTSKLVEDAQKECLLVNAPLICRATSRIPFSVLKYAMTLDGKIAASSGHASWISSKESRNLVFDLRGRSDAVIVGGNTVRKDNPRLTVRHGGGRMPVRIVMSQTLNLPDEAHLWDTSEVSTMVVTQRGARRSFQKLLASKGVEVVEFDMLNSQDVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFIAPKIIGGKNAPSPVGELGMVEMSQALNLIDVRYEQVGPDMLVSGFLQPLPDMVPVIPSLEETFVVDPTISRYESSIIFFYKTWDPYGAFSNFSPHAIQMPDENGDYVTWSSVEHFYQAHKFVGADDACADCVERIKSAKSPEEAAKIGRSMQRKRPDLVRPGWDNMKIDVMYRALKCKFSMYPHLKSMLLATAGCVLVEASPHDLFWGGGRQGDGLNYLGQLLMKLRSEFLGESSSSEAPSLTV* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3008 593 Gene3D Dihydrofolate Reductase, subunit A 178 394 IPR024072 -
Lja1g3008 593 SUPERFAMILY Cytidine deaminase-like 32 152 IPR016193 GO:0003824
Lja1g3008 593 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 3 414 - -
Lja1g3008 593 SUPERFAMILY YbiA-like 413 581 IPR037238 -
Lja1g3008 593 Pfam RibD C-terminal domain 188 390 IPR002734 GO:0008703|GO:0009231
Lja1g3008 593 Gene3D Cytidine Deaminase, domain 2 21 160 - -
Lja1g3008 593 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 37 390 IPR004794 GO:0008835|GO:0009231
Lja1g3008 593 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 31 152 IPR002125 -
Lja1g3008 593 TIGRFAM ribD_Cterm: riboflavin-specific deaminase C-terminal domain 185 392 IPR011549 GO:0008703|GO:0009231|GO:0050661
Lja1g3008 593 SUPERFAMILY Dihydrofolate reductase-like 185 392 IPR024072 -
Lja1g3008 593 Gene3D - 416 586 IPR037238 -
Lja1g3008 593 TIGRFAM ribofla_fusion: conserved hypothetical protein 426 578 IPR012816 -
Lja1g3008 593 Pfam NADAR domain 427 579 IPR012816 -
Lja1g3008 593 CDD NADAR 424 577 IPR012816 -
Lja1g3008 593 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRR, CHLOROPLASTIC 3 414 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3008 K11752 - gmx:100801283 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3008 1 36469689 36475026 Lja1g3008 1 36469689 36475026 ECH