Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1027 ATGGCGGCGTCCTTCCCTTCGCCCATCATCTGCAAAGCCACCACCAACAACAACCATCCCCACGCGCTCGATTCTTTCCACGTGCGACGTGCCGCTGAGATCGCCGACAAATCTGCCGGATTCACGTCGCCGCACCCCAACTTCGGCTGCGTGATCGCCACAGCCGGGAAAGTCGTCGGGGAGGGCTACCTCTACGCTCAAGGAACTAAGCCGGCGGAGGTCCAGGCGGTGGAGGCCGCCGGCGAGTTGTGCAGAGGCGCCACTGCTTATCTCAACATGGAGCCCGGCGATTGTCACGGTGACCGTACGGCGGTCTCTGCTCTTGTCAAGGCAGGAATTACACGAGCTGTTGTTGGGATCAGGCATCCTTTGCAACATCTTCGCAGCCATGCTCTACGGGCAATGAGGAGTGAAGGACTGCAGGTGGATGTTCTTGGAGAGGATCTGAAAAGTAAAATTGTTGAGGAAGCTTTAAAATCGTGCCTCATCGTCAATGCTCCTTTGATATATAGAGCTGCTTCTCGAGTTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTAGTAGTGGGCATGCGTCATGGATAAGCAGCAAAGAATCTAGGTATCGAGTGTTTGAACTGCGGGGTAGAAGTGATGCCATAGTTGTGGGAGGAAACACTGTGCGCAAAGACAATCCACGGCTAACTGCAAGACATGGAGGTGGACACGTGCCCATTCGGATTGTAATGTCACGGACACTTAATCTTCCTGAGGTAGCCAATCTTTGGGATGTATCAAGTGTACCTACTATAGTTGTAACACAAAGAGGTGCAAGGAAGAGTTTCCAGAAATTTCTTGCTTCAAAAGGTGTTGAAGTAGTTGAATTTGACATCCTAAACACTAGAGATGTTATGGAATATTTTTATGATCGTGGGTACCTTTCAATTTTGTGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGCATCATACACAAGGTATTTGCATTTGTTGCCCCTAAAATTATAGGTGGAAAGAATGCACCAACTCCTGTTGGTGAACTGGGAATGGTTGAGATGACGCAAGCACTAGATTTAATCGATTTTTCCTATGAGCAGATTGGACCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTTCCTGATCCTACTCCTGTTATCCCATCAGTGGATGAAACTTATGCAATTGATCCTTCTGTTACTCCTTATGAATCAATCATCATATTCTTTTATAAAACATGGGATCTTTATGGAGCTTTTTCAAACTTCTCTCCTCACCCTATACAAATGCCTGATGAAAATGGTGATTATCAGACCTGGTCAAGCGTAGAGCATTATTACCAGGCACACAAGTTTGTTGGGGTTAATGACCCTGTACCAAGAGATTTTGTCGAGGACATAAAATCTGCAAAAAGTCCTGAGGAAGCAGCAAGAATGGGAAGGACAATACAGAGGCAGCATCCTGATCTGGTAAGATCTGATTGGGACGCTGTCAAGATTGATGTCATGTACAGGGCCTTGAAATGCAAATTTTCAATTTATCCTCATTTGAATTCTATGCTGGTCTCTACTGCTGGGTCAGTTCTCGTTGAAGCTTCCCCACATGATCTCTTCTGGGGCGGAGGTCGGGATGGAGAAGGCCTAAATTATCTGGGTAGGCTTCTCATGCAGTTGAGGTCAGAATTCCTAGGCGAGTCCTTAACATCAAGTGAGAGCTCTTTCCTAGCTCTATAA 1761 0.4673 MAASFPSPIICKATTNNNHPHALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCHGDRTAVSALVKAGITRAVVGIRHPLQHLRSHALRAMRSEGLQVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASWISSKESRYRVFELRGRSDAIVVGGNTVRKDNPRLTARHGGGHVPIRIVMSRTLNLPEVANLWDVSSVPTIVVTQRGARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTPVGELGMVEMTQALDLIDFSYEQIGPDMLISGFLQPFPDPTPVIPSVDETYAIDPSVTPYESIIIFFYKTWDLYGAFSNFSPHPIQMPDENGDYQTWSSVEHYYQAHKFVGVNDPVPRDFVEDIKSAKSPEEAARMGRTIQRQHPDLVRSDWDAVKIDVMYRALKCKFSIYPHLNSMLVSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRSEFLGESLTSSESSFLAL* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1027 586 FunFam Swarming motility protein ybiA 410 575 - -
Vvi4g1027 586 PANTHER DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) 170 387 - -
Vvi4g1027 586 SUPERFAMILY Dihydrofolate reductase-like 176 383 IPR024072 -
Vvi4g1027 586 SUPERFAMILY YbiA-like 405 573 IPR037238 -
Vvi4g1027 586 CDD Riboflavin_deaminase-reductase 29 139 - -
Vvi4g1027 586 Gene3D - 410 577 IPR037238 -
Vvi4g1027 586 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 22 143 IPR002125 -
Vvi4g1027 586 Pfam NADAR domain 418 571 IPR012816 -
Vvi4g1027 586 Gene3D Cytidine Deaminase, domain 2 12 152 - -
Vvi4g1027 586 SUPERFAMILY Cytidine deaminase-like 24 142 IPR016193 GO:0003824
Vvi4g1027 586 NCBIfam riboflavin-specific deaminase C-terminal domain 176 382 IPR011549 GO:0008703|GO:0009231|GO:0050661
Vvi4g1027 586 Pfam RibD C-terminal domain 179 381 IPR002734 GO:0008703|GO:0009231
Vvi4g1027 586 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 28 381 IPR004794 GO:0008835|GO:0009231
Vvi4g1027 586 Gene3D Dihydrofolate Reductase, subunit A 169 385 IPR024072 -
Vvi4g1027 586 CDD NADAR 416 569 IPR012816 -
Vvi4g1027 586 NCBIfam conserved hypothetical protein 417 570 IPR012816 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1027 K11752 - vvi:100264997 1177.54