Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03477 ATGGATCTCAAAGGATTACTGCTTCTGGCCTTAttagtttttgaattttcttctcttgccTATGGAAATTTGGTGTTTCCAGTAGAGCACAAATTCAAAGGTCGCCAAAGGACTTTGAGTGCTATGAAAGCCCATGATGACCGTCGTCGAGCAAGAATTCTTTCTGCCCTGGATCTCAGCCTTGGCGGCAATGGCCGCCCTTCTAAAACTGGgctgtattatacaaaaattcaacTTGGGTCTCCTCCAATGGACTACTACGTGCAAGTTGATACGGGAAGTGACATCTTATGGGTAAACTGTGTTCAATGCAAGACATGTCCTCAGAAAAGTTCTCTTAAGATAGAACTGATACTATATGACCCAAAGAGCTCCAACACCTCACATTTGGTTTCCTGCAACGATGATTTTTGCACTTCCACATACAATGGGCCAGTTAATGGTTGCAAGCCTGGGATGGGCTGCGAATTCAGTGTGGTTTACGGGGATGGAAGTGGAACTGCTGGATACTTTGTGAGGGATTATCTGACATTTGACCAAGTAAATGGCAACCTTCAAACGACACCAGGAAATAGCAATGTGATTTTTGGGTGTGGAGCTTCGCATTCTGGGGGATTAAGTTCatctgatgatgatgatgcacTTGGCGGAATTATTGGTTTTGGGCAAGCGAATTCATCAGTGCTTTCACAGCTTGCTGCAGCTGGAAAGGCGAAAAGGATTTTTTCACACTGCCTTGATACTCATCGTGGAGGTGGAATCTTTGCCATAGGGGAGGTTGATGAgccaaaagtgaaaaaaagtCCATTGGTAGCAAATCAGGCACactacaatttatttttgaaggaCATTGAGGTCGACAAGGACTTTCTAGATCTCCCCACAAGTATATTTGACTTTGGAACTGGGCAGAGAGCTATAATAGATAGTGGTACAACTTTGGCTTATTTGCCATCTTCGGTTTATGAGCAACTAATGAGCAAGGTTTTCTCTCGGCAACCTGGACTGGAGACACATACCCGTAACGACCATatcatttgttttgattatgatGGAAATGTTGACAATGGATTTCCAACCGTCAAGTTTCATTTTAAGGAATCAGCTACTCTGACAGTTTATCCGCACGATTACCTGTTCGAGTTTGATAATGAGTGGTGCGTTGGCTGGCTGAGAACTACGTCACAAAGTAAGGATGGAAGGGAGATGACTCTTCTTGGAGATTTGGTGCTTTCAAATAGACTATTTGTATATGATCTTGAAAATATGAGCATTGGATGGACAGATTACAATTgCTCTTCCAGCATAAAAGTGAAGGATCGTGAATCTGTGTACAAAGTGTCTGCACACGATATATCTTTGGCCTGCGCCGTCTTAATTGGAAGAATACTgtcattcattttcttgttagtTGCGATGCTTGCTTA 1427 0.3931 MDLKGLLLLALLVFEFSSLAYGNLVFPVEHKFKGRQRTLSAMKAHDDRRRARILSALDLSLGGNGRPSKTGLYYTKIQLGSPPMDYYVQVDTGSDILWVNCVQCKTCPQKSSLKIELILYDPKSSNTSHLVSCNDDFCTSTYNGPVNGCKPGMGCEFSVVYGDGSGTAGYFVRDYLTFDQVNGNLQTTPGNSNVIFGCGASHSGGLSSSDDDDALGGIIGFGQANSSVLSQLAAAGKAKRIFSHCLDTHRGGGIFAIGEVDEPKVKKSPLVANQAHYNLFLKDIEVDKDFLDLPTSIFDFGTGQRAIIDSGTTLAYLPSSVYEQLMSKVFSRQPGLETHTRNDHIICFDYDGNVDNGFPTVKFHFKESATLTVYPHDYLFEFDNEWCVGWLRTTSQSKDGREMTLLGDLVLSNRLFVYDLENMSIGWTDYNCSSSIKVKDRESVYKVSAHDISLACAVLIGRILSFIFLLVAMLA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03477 475 Pfam Xylanase inhibitor N-terminal 73 258 IPR032861 -
Bva04g03477 475 Gene3D Acid Proteases 261 438 IPR021109 -
Bva04g03477 475 SUPERFAMILY Acid proteases 68 436 IPR021109 -
Bva04g03477 475 Pfam Xylanase inhibitor C-terminal 276 428 IPR032799 -
Bva04g03477 475 PANTHER ASPARTYL PROTEASES 6 448 IPR001461 GO:0004190|GO:0006508
Bva04g03477 475 CDD pepsin_A_like_plant 73 432 IPR034161 -
Bva04g03477 475 PRINTS Pepsin (A1) aspartic protease family signature 404 419 IPR001461 GO:0004190|GO:0006508
Bva04g03477 475 PRINTS Pepsin (A1) aspartic protease family signature 79 99 IPR001461 GO:0004190|GO:0006508
Bva04g03477 475 PRINTS Pepsin (A1) aspartic protease family signature 253 266 IPR001461 GO:0004190|GO:0006508
Bva04g03477 475 PRINTS Pepsin (A1) aspartic protease family signature 306 317 IPR001461 GO:0004190|GO:0006508
Bva04g03477 475 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 6 448 - -
Bva04g03477 475 Gene3D Acid Proteases 61 259 IPR021109 -
Bva04g03477 475 ProSiteProfiles Peptidase family A1 domain profile. 73 428 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03477 Bva-Chr4 27510931 27514412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03477 55 433 Miscellaneous Gene Families AT1G44130 26.768 1.13e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03477 - - gmx:100801883 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03477 04 27510931 27514412 Bva04g03477 04 27510931 27514412 ECH