Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1640 ATGGATCTGAAATTTTTGTTGTTAATAGTTTTGGAAATTGTGTGTGTTACGATTGCGAATGGGAATGATTTAGTGTTTCAGGTGGAACGTCGGAAAACGAGTTTGAGTGGAATTAAAGATCACGATGATCATCGTCGTGGTAGATTTCTTTCAGATGTTGATATCAACCTTGGTGGTAATGGTCTTCCGACTCGAACCGGGTTGTATTTCACAAAACTTGGGATTGGTTCTCCAAAGAAGGACTACTATGTTCAAGTTGATACAGGAAGTGATCTTATGTGGGTGAATTGTATTGAGTGCTCAAAATGTCCCAAGAAAAGCGACATCGGTATGGACTTGACCCTCTATGACCCAAAGGGATCTCATACTTCAGAGTTAATTTCTTGTGACCAAGATTTTTGCTCTTCCACATTTGATGGTCCGATTTCTGGTTGCAAGCCTGAAATACCCTGCCCTTATAGCATAACTTATGGAGATGGAAGTTCAACTGCTGGATACTATGTCAGGGATTATCTTACTTTTGACTTTGTCGATGGAAACCTCCATACTGCACCGCAAAATAGCAGTATTATTTTTGGGTGTGGCGCAGTACAATCTATGGGTTCATCTAATGAAGGAGCCCTTGATGGAATAATTGGTTTTGGACAAGCAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCACGAAAGGTGAAAAAAATATTTTCGCACTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAATTGGTGGAACCAAAAGTCAGTACAACTCCATTGGTACCAAATATGTCACATTTCAATGTGGTTTTGAAGAATATTGAAGTTGATGGTGATATTCTACAGCTTCCCTCAGATATATTTGATTCTGGAAATACGAAGGGGACAGTTATTGATAGTGGAACAACCTTGGCTTATCTTCCTCTCATAGTTTATGACGAACTACTGTCAAAGGTTTTTGCTCGGCACTCTGGTTTGAAATTAGAGCTTGTTGAGGGACAATTTAAATGTTTTCATTATGCTGGAAATGTTGATGATGGATTTCCAGTTGTGAAGCTACATTTTGAGGACTCCCTTTCTCTGACAGTTTATCCTCACGAGTACCTGTTCCCATACAGCGATGGTGAACGGTGTATTGGCTGGCAGAGAAGTGTGCCACAAACTAAGGACGGAAAGGATATGACACTTCTTGGAGATTTGGTACTATCAAACAAACTAGTCTTGTATGATCTTGAGAATATGGTCATTGGATGGACTGACTACAATTGCTCTTCCAGCATTAAAGTTAAGGATTCATCCGGAACAGTACATACAGTGGGTGCACACAATCTTTCTCCAGCTTCTACCTTTCTAAATGGTAGAACATTGACATTCTTTTTGCTGCTAACTGTCATGCTAAACTGTTTTTTTAACTAG 1425 0.3986 MDLKFLLLIVLEIVCVTIANGNDLVFQVERRKTSLSGIKDHDDHRRGRFLSDVDINLGGNGLPTRTGLYFTKLGIGSPKKDYYVQVDTGSDLMWVNCIECSKCPKKSDIGMDLTLYDPKGSHTSELISCDQDFCSSTFDGPISGCKPEIPCPYSITYGDGSSTAGYYVRDYLTFDFVDGNLHTAPQNSSIIFGCGAVQSMGSSNEGALDGIIGFGQANSSVLSQLAASRKVKKIFSHCLDNIRGGGIFAIGELVEPKVSTTPLVPNMSHFNVVLKNIEVDGDILQLPSDIFDSGNTKGTVIDSGTTLAYLPLIVYDELLSKVFARHSGLKLELVEGQFKCFHYAGNVDDGFPVVKLHFEDSLSLTVYPHEYLFPYSDGERCIGWQRSVPQTKDGKDMTLLGDLVLSNKLVLYDLENMVIGWTDYNCSSSIKVKDSSGTVHTVGAHNLSPASTFLNGRTLTFFLLLTVMLNCFFN* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1640 474 Pfam Xylanase inhibitor C-terminal 271 422 IPR032799 -
Tpr1g1640 474 Gene3D Acid Proteases 61 252 IPR021109 -
Tpr1g1640 474 SUPERFAMILY Acid proteases 63 430 IPR021109 -
Tpr1g1640 474 PANTHER ASPARTYL PROTEASES 7 443 IPR001461 GO:0004190|GO:0006508
Tpr1g1640 474 Pfam Xylanase inhibitor N-terminal 69 251 IPR032861 -
Tpr1g1640 474 ProSiteProfiles Peptidase family A1 domain profile. 69 422 IPR033121 -
Tpr1g1640 474 Gene3D Acid Proteases 253 432 IPR021109 -
Tpr1g1640 474 PRINTS Pepsin (A1) aspartic protease family signature 75 95 IPR001461 GO:0004190|GO:0006508
Tpr1g1640 474 PRINTS Pepsin (A1) aspartic protease family signature 299 310 IPR001461 GO:0004190|GO:0006508
Tpr1g1640 474 PRINTS Pepsin (A1) aspartic protease family signature 398 413 IPR001461 GO:0004190|GO:0006508
Tpr1g1640 474 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 443 - -
Tpr1g1640 474 CDD pepsin_A_like_plant 69 426 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1640 Tpr-Chr1 15511146 15517306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1640 51 427 Miscellaneous Gene Families AT1G44130 27.320 3.75e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1640 - - gmx:100801883 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1640 1 15511146 15517306 Tpr1g1640 1 15511146 15517306 ECH